Chelonoidis abingdonii (Abingdon island giant tortoise): 116832464
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Entry
116832464 CDS
T07367
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04120
Ubiquitin mediated proteolysis
cabi04137
Mitophagy - animal
cabi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116832464 (PRKN)
04120 Ubiquitin mediated proteolysis
116832464 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116832464 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cabi04131
]
116832464 (PRKN)
04121 Ubiquitin system [BR:
cabi04121
]
116832464 (PRKN)
03029 Mitochondrial biogenesis [BR:
cabi03029
]
116832464 (PRKN)
Enzymes [BR:
cabi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
116832464 (PRKN)
Membrane trafficking [BR:
cabi04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
116832464 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
116832464 (PRKN)
Xenophagy
Other xenophagy associated proteins
116832464 (PRKN)
Ubiquitin system [BR:
cabi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
116832464 (PRKN)
Mitochondrial biogenesis [BR:
cabi03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
116832464 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Dsc3_N
Crinkler
Luteo_PO
Motif
Other DBs
NCBI-GeneID:
116832464
NCBI-ProteinID:
XP_032649099
LinkDB
All DBs
Position
Unknown
AA seq
462 aa
AA seq
DB search
MFIRFNSSHGFPVEVDSDTSIFQLKEVVAKRQRVPADQLRVIFAGKELRNDLTLQNSDLA
QQSIVHIVQSPLDSGQERTDVETANAGGILGGMEKEPESLTRLDLSASVLPSYSAGLAVI
LDTTDNSSSTPSDKPGAASYNSFYVFCKSFCQAVKPGKLRVRCSTCKEGTLTLIRGPSCW
EDVLIPNRIAGTCRSRNCHGDIAEFYFKCGAHPTSDSETSVALNLITTNSQHITCITCTD
IRSPVLVFQCLHRHVICLDCFHLYCVTMLNDRKFIHDPVLGYSLPCVAGCPDSLIKELHH
FRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPEVRKIVCEPSNGLGCGFM
FCRECKEEYHDGECSTLLSSQEAIAQKGYMIDEHAAMQARWEEASRETIKKTTKPCPSCH
VPVEKNGGCMHMKCPQAQCRFEWCWNCGLEWNRTCMGDHWFD
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgttcatcaggttcaactccagccatggtttcccagtggaggttgattcagacaccagc
atcttccagctcaaggaggtggttgctaagcgacagagagttccagctgaccagttgcgt
gtgatttttgcagggaaggagcttaggaatgacttgacactgcagaacagtgacttggcc
cagcagagtatagttcatattgttcagagtcccctagacagtggtcaggaaaggactgac
gttgaaactgccaacgctggaggtattctaggaggcatggaaaaagagcctgaaagtcta
acccgtttagaccttagtgccagcgtcctcccatcttattctgcagggctggctgttatt
ctggatactacagacaacagcagttccacaccgtctgataaaccaggtgcagctagttac
aacagtttttatgttttctgcaaaagtttctgccaagctgtgaagcctggaaaactgcgg
gtccgttgtagtacatgtaaagaagggacactgactctgatacggggtccatcttgctgg
gaggatgtgctgattccaaacagaatagctggtacttgccgatcccgaaactgccatgga
gatatagcggagttttattttaaatgtggagcacacccaacttctgacagtgaaacatct
gtggctttgaacctcattacaacaaacagccagcatatcacatgtataacatgcacagat
attagaagtcctgtgctggtgttccagtgcttgcatcgccatgtcatttgcctagactgc
ttccatttatactgtgtgactatgctgaatgatcggaagttcatccatgaccctgtgctt
ggctactctctcccatgtgttgctggctgtccagactccttgattaaagagcttcatcac
ttcagaattctgggagaagaacagtacaaccgctaccagcgctatggtgcagaagaatgt
gtgctgcagatgggcggagtgctgtgtcctaccccaggatgtggtgctggcctgcttcct
gaaccagaagtgagaaaaatagtatgtgagccaagcaatggactgggctgtgggttcatg
ttctgccgtgaatgtaaagaagaataccatgatggggaatgcagcactctcctcagttca
caggaagccatagcccagaagggatatatgattgatgagcatgcagccatgcaagcacga
tgggaagaggcatccagagaaacaatcaagaaaacaactaaaccgtgtcctagttgccat
gtaccagtagaaaaaaatggtggatgcatgcacatgaaatgtcctcaagctcagtgcaga
tttgagtggtgctggaactgtggtttggagtggaacaggacctgcatgggagaccactgg
tttgactaa
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integrated database retrieval system
