Chelonoidis abingdonii (Abingdon island giant tortoise): 116832802
Help
Entry
116832802 CDS
T07367
Symbol
VPS39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04140
Autophagy - animal
cabi04142
Lysosome biogenesis
cabi04148
Efferocytosis
cabi05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
116832802 (VPS39)
04140 Autophagy - animal
116832802 (VPS39)
04148 Efferocytosis
116832802 (VPS39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
116832802 (VPS39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cabi04131
]
116832802 (VPS39)
Membrane trafficking [BR:
cabi04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
116832802 (VPS39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
SAM_CEP-1_C
LIF1_N
DUF4145
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
116832802
NCBI-ProteinID:
XP_032649729
LinkDB
All DBs
Position
4:88916432..88960757
Genome browser
AA seq
884 aa
AA seq
DB search
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDIGEVTSSESGCCNRF
EVTLEKSNKNFSKKIQQIHVVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTC
DLQHSDTGEEVLRMCVAVRKKLQLYFWKDREFYELQGDFSVPDVPKSMAWCENSICVGFK
RDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGICTQKGALN
WTDIPIAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGGTNIVYVASNHF
VWRLLPVSIATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKRF
DESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQ
KRSQLVKKLNDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRL
ENNHCHIEESEHVLKKAHKYSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQY
LQHLGTENLHLVFLYSTWVLRDFPDDGLKIFTEDLPEVESLPRDKVLNFLIENFKSLAIP
YLEHIIHVWEETGSEFHNCLIQLYCEKVQGLMKEYLSSFPADKIPVPAGEEEGDLGEYRR
KLLCFLEISSCYEPSRLISDFPFDGLLEERALLLGRMGKHEQALIIYVHILKDTKMAELY
CHKHYDRSKDGNKDVYLSLLRMYLSPPSVHCLGPIKMELLEPQANLQAALQVLELHHSKL
DTTKAINLLPANTQISEIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQV
KCIITEEKVCTVCKKKIGNSAFARYPNAVVVHYFCSKEVSTADT
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccttcgagccggtgccgatcctggagaagctaccgctgcagatagactgt
ctggcggcctgggaggaatggctgctcgttggcaccaaacaagggcatcttctcctttac
aggatcaggaaggatataggagaggttacgtcatcagaaagtggctgttgcaacagattt
gaagtgacactagagaaatccaacaagaacttctcaaaaaagattcagcagattcatgtt
gtttcccagtttaaaattctggtcagtttgttagaaaataacatctatgtccatgacctg
ttgacatttcaacaaatcaccacagtctcgaaggcaaaaggtgcatctctgttcacctgt
gacttacagcactctgatacaggggaggaggtgctgaggatgtgcgtggcagtgcggaag
aagctacagctgtatttctggaaggacagggagttctatgagctacagggggacttcagt
gtgcccgatgtgcccaagtctatggcatggtgtgaaaattctatctgtgtaggtttcaaa
agagactattatctgataagggtggatggaaaagggtccatcaaagaactgttccccaca
gggaagcagcttgaaccattggtggctcccttagcagatggaaaagttgcagttggtcaa
gatgatctaacggtagtacttaacgaagaagggatttgtactcagaaaggtgccttgaat
tggacagacattcccatagctatggaacatcagcctccatacatcattgcagtgctacca
aggtatgtggagattcgcacttttgaacctcggctgctggtgcagagtattgagctgcag
agaccacgcttcatcacctccggaggtacgaatattgtgtatgtggccagcaatcatttt
gtttggcgtctccttccagtctccatagcaacccagatccagcagcttctccaagacaag
cagtttgaattggctctgcagttggcggaaatgaaagatgattcagacagtgaaaagcaa
caacagattcatcacattaagaacctttatgcctttaacctcttctgccagaagcgcttc
gatgaatccatgcaggtttttgccaagctcggtacagatcccactcacgtgatgggtctg
tatcctgacttgctgcccactgattacaggaaacagctgcagtatcctaatcctctgcct
gtgctctctggggctgagctggagaaagcacacttagcactcatagactatctaactcag
aaaagaagtcagctggtaaagaagttaaatgactcagaccaccagtccagcacctcaccc
ctcatggaaggaacacccaccatcaaatccaaaaagaagttgctccaaatcattgacacc
accctgctcaaatgttacctacatacaaatgtagctctggtagcaccgttgctacgtttg
gagaacaatcactgccacatagaagagagtgagcatgtactgaagaaggcacacaaatac
agtgagctgataatactatatgagaagaaagggctgcatgaaaaagctctgcaggtgcta
gtggatcaatcaaagaaagccaactcacctttgaagggccatgaaaggacagtgcagtat
ctacagcatttgggcacagaaaacttgcacttggtgttcctttattccacgtgggtgctg
agagactttcctgatgatggtttgaagatatttacagaagaccttcctgaagtggaatcc
ttgcctcgagacaaagtactcaactttttgatagaaaactttaaaagcctggctatccct
tacctggaacacatcatccatgtttgggaggagacgggctcagaattccacaattgtttg
atccagctgtactgtgagaaggtgcagggattaatgaaggaatatctcagctccttccct
gcagataaaattccagtgcctgctggagaggaggaaggagacctgggggagtatcggaga
aagctactttgttttcttgagatttctagctgctatgaacctagtcgtctcatcagtgat
ttcccctttgatggcctcttagaagaacgtgccctgctgttgggtcgtatggggaagcat
gaacaagccctcattatctatgtccacattctgaaggataccaaaatggctgaactgtac
tgccataaacactatgacagaagcaaagatggcaacaaagatgtgtatctgtctctgctc
cggatgtatctatcgccacctagtgttcattgcttggggccaatcaagatggaactgttg
gagcctcaagccaatctccaggctgccctgcaggttttagaattgcaccacagcaaatta
gatactaccaaggctataaacctgctcccagcaaatactcaaattagtgagattcgaatc
ttcctagaaaaagtccttgaagaaaatgcccagaagaaacgattcaaccaagtactcaaa
aatcttctccatgcagaattcctgagggttcaggaggagaggattttgcatcagcaggtg
aagtgtatcatcacagaggaaaaagtgtgcactgtgtgtaaaaagaagataggaaatagt
gcatttgcccgataccctaatgcagtagttgtgcactacttctgctccaaagaagtcagt
acggcagacacctga
DBGET
integrated database retrieval system
