Chelonoidis abingdonii (Abingdon island giant tortoise): 116833597
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Entry
116833597 CDS
T07367
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain
KO
K16617
collagen type XIII alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116833597 (COL13A1)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116833597 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
116833597
NCBI-ProteinID:
XP_032651098
LinkDB
All DBs
Position
Unknown
AA seq
770 aa
AA seq
DB search
MLEEKVWKGASNGAFDRGCIASPRTGDGERCCRFPLLLGSGLPGVSLISLVLSLLLYFRT
SDLQSRVSHLEADRCTQLPAWLSADQMETAILGRVDQLLDEKLKFNLPRHREVRDIHQRC
NCPAGPPGPTGRPGLPGDKGAMGIPGRPGLKGQPGEKGTPGEAGMSIIGPRGPPGQPGTR
GFPGFPGPIGLDGKPGHPGQKGEMGVAGPKGQPGPPGQKGEKGQCGDYPHRLLPLLNSVR
LAPPPVIKRRTFQGEQGQAGIQGPPGQPGPPGPTGPSGPAGNPGQPGPVGPPGKAGEPGK
AGKDGKGLPGPPGPKGDPGIQGYHGRKGEVGEAGLPGAPGLPGPIGPKGEKGDTGVKGER
GMPGLPGKHGAKGEKGRAGDPGLPGFLGQKGEKGDAGNALGGGKGEPGHPGLPGPPGPKG
EAGDIGQTGIAGPQGEKGEPGAPGEEGPVGPRGPKGEPGKDEMVDYEGNINEALQEIRTL
ALMGPPGLPGVAGPPGLPGQKGEIGLPGPPGHDGEKGPRGKSGEVGPPGPQGPPGKEGPP
GVKGETGLMGTPGAKGEKGEAGEAGSPGLDGPTGEKGEQGDQGIPGPSGLPGLIGLPGLT
GEKGEPGEDGEKGNPGDSVSGPPGPQGPPGAAGLQGLPGPKGEAGIDGMKGEKGVQGEKG
DRGPLGLPGASGLDGRPGPPGTPGPIGAPGPAGPKGERGSKGDPGNAGPMGLAGLPGLQG
PSGDKGNRGERGKKGSRGPKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaaggtctggaaaggtgctagcaatggtgcctttgacagggggtgcatt
gcttcccccaggacaggggatggagaaagatgctgcaggtttcctctactgctgggatct
gggcttccaggggtgtctttgatttctctggtgctgagcctcctgctatactttaggaca
tcagacctgcaatccagggtttcacatttggaagcagacagatgcactcagctccctgcc
tggctctctgcagaccaaatggagacagctattttgggaagagttgaccaactgcttgat
gagaaattaaagttcaacttgccgagacatcgagaagttcgagatatccaccagaggtgc
aattgcccagcaggacctcctggccctacaggaagaccagggcttccgggagacaaaggc
gccatgggaatccctggaagaccgggactaaaggggcaacccggagagaagggaacccct
ggagaagcaggcatgtccatcatcggtccccgaggccctcccggacagcctggaacgaga
ggttttcctggatttccgggcccgattggtttggatggcaaaccgggccatcctggacag
aagggggagatgggtgttgctggtcccaagggacagccgggacctccaggacaaaaagga
gaaaagggccagtgtggagactacccacacaggctgttgcctctcctcaattcagtgcgg
ctggctccacccccggttataaagagacgcactttccagggtgaacaaggacaggcgggg
attcaaggtccgccagggcaacctggtccaccagggccaactggaccatctggaccagca
ggaaatccaggacaacctggccctgttgggccacctggcaaagcaggggagcctggaaag
gcaggcaaggatggaaagggtttacctggaccccctggaccaaagggagaccctggaatt
caaggataccatgggaggaagggtgaggtgggtgaggctggcctaccaggtgcacctggc
cttcctggacctattggccccaagggtgaaaagggggacactggcgtgaagggggagagg
ggcatgccagggctgccaggaaaacatggagctaagggggagaagggaagagctggtgat
cctgggcttcctggattcctaggacagaagggagagaagggagatgctggcaatgcactc
gggggaggtaaaggggaacccggacacccgggactacctgggcctccaggaccaaagggg
gaagctggtgacattggccagactggaattgcaggaccgcagggggaaaagggagaacct
ggagcacccggagaagaggggcctgttggtccaaggggtcccaaaggggagccaggaaag
gatgaaatggtggattatgagggtaacatcaacgaagctctacaggaaatacgaaccttg
gccctgatgggacctcctggacttccaggagtagctgggcccccagggctaccaggacag
aagggtgaaattggtttaccgggtcctcctggacacgatggagagaaggggccacgtggt
aaatcaggagaggtggggcctcctggtccccaagggcccccaggaaaggagggacctcct
ggagtgaagggagagactggacttatggggaccccaggagcaaagggggaaaagggggag
gcaggagaagctggctctccgggtcttgatggcccaactggggagaaaggagaacaaggt
gaccaagggataccaggaccttcaggattaccgggtctaattggacttccaggactgaca
ggagaaaaaggagaacctggtgaggatggggaaaaaggaaacccaggggactcagtatcg
gggccacccgggccccaaggcccaccaggtgctgcaggtcttcaaggccttccaggaccg
aagggggaagcagggattgatggaatgaaaggagagaagggtgtccagggtgagaaagga
gaccgaggtccactgggattgcccggtgcttcaggtttagacggcaggcctggaccaccg
ggtactccaggaccaattggagctccaggaccagcaggaccaaaaggggaaaggggcagt
aaaggtgaccctggaaatgcaggaccaatggggctagctgggcttcctggtttacaaggc
ccatctggtgacaaaggaaaccggggggagaggggcaagaaaggctctagagggcctaaa
ggggataagggagaccaaggagcgcctggattagatgcaccctgtccattgggggaagat
ggcttgccagttcagggctgctggaataagtga
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