Chelonoidis abingdonii (Abingdon island giant tortoise): 116834744
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Entry
116834744 CDS
T07367
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116834744 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116834744 (COL11A1)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116834744 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
116834744
NCBI-ProteinID:
XP_032652945
LinkDB
All DBs
Position
Unknown
AA seq
1815 aa
AA seq
DB search
MEMQRWSTRWKTKRWLRDSTVTTLITFTFFLQAAEVRGAEPVDVLKALEFHKSPEGISRT
TGFCTNRRDSKGSDVAYRVSKHAQISAPTKQLYPGGNFPQDFSILITVKPKKGIQSFLLS
VYNEQGIQQIGVEVGKSPVFLFEDQYGKPVPEDYPLFRTVNIADGKWHRVAISVKKKSVT
MIVDCKEKTTKALNRNDRAIVDANGVTVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCE
HYSPICDSPVPNAPQAQEPQVEEYATEDLIEYDYEYGEADYKESDTVTEGPPQFEETITQ
TEANIVDEFQEEYSVTETDYGISEGSQTEAPRHTTEANEHNPVEEVFAEEYLTGEDYDSE
HKKNEDTEYGSRGVDLSESDLLVDGELGEYDFYEYKEYEEKPTNPTNEEFGPGVPAETDI
TETSVTGHGAYGEKGQKGEPAVVEPGMLVEGPAGPAGPPGLTGPPGLQGPTGPSGDPGER
GPSGRPGLPGADGLPGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAMRGPP
GPMGLTGRPGPVGGPGSPGIKGESGDPGPQGPRGIQGSIGPSGKPGKRGRPGADGARGMP
GEPGSKGDRGFDGLPGLPGDKGHRGDRGPQGPPGAPGEDGTRGEDGEVGPRGLPGEAGPR
GLLGPRGTPGPPGQPGFAGVDGPPGPKGNLGPQGEPGPPGQQGIPGPQGLPGPQGPIGAP
GEKGPQGKPGLPGLAGSDGPSGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVR
GLKGSKGEKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRAGPTGDPGGAGQA
GEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGPRGSR
GPRGPTGKPGPKGTAGSDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQR
GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP
GPQGISGKDGPPGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPVGSPGERGSAGTAGPI
GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPGGSPGEDGDKGEI
GEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGPRGFP
GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGV
GDKGEPGEAGNPGPPGESGPGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPV
GFPGDPGPPGEPGPAGQDGTGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAE
GRQGEKGAKGEPGSEGAPGKTGPVGPQGPSGKPGPEGLRGIPGPVGEQGLPGASGQDGPP
GPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGALGAKGDTGIP
GPAGPLGPPGPPGLPGPQGPKGSKGSTGPGGQKGDGGLPGPPGPPGPPGEVIQPLPIQSP
KKTRRSPDYMLADAADNILDYSDGMEEIFGSLNSLKQDIEHMKYPMGTQNNPARTCKDLQ
LCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRFSSWPNENPGAW
FSEFKRGKLLSYVDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDGPSDSYDKA
LRFLGSNDEEMSYDNNPYIKALHDGCASRKGYAKTVIEISTPKIDQVPIVDVMINDFGDQ
NQKFGFEVGPVCFLG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacaaggtggaaaacgaaaaggtggctccgggactccact
gtaaccacactcatcacttttactttctttctccaggctgcagaggtcagaggagctgaa
ccagttgatgtgctaaaagcattagaatttcacaagtcaccagaaggaatatcaagaaca
acaggattttgcacaaacagaagagattcaaaaggatcagatgttgcctacagagtttca
aaacatgcgcaaatcagtgccccaacaaagcaactgtacccaggtggaaactttcctcaa
gacttttcaatattaattacagtgaaacctaaaaaggggatccagtccttccttttatct
gtctataatgaacagggtattcagcaaataggtgtggaagttggtaaatcccctgtcttc
ctgtttgaagatcagtatggaaaacctgtcccagaagattatcctctttttaggacagtc
aacattgctgatggaaagtggcatcgggtagctatcagtgtgaagaagaaaagtgttacc
atgattgttgactgtaaagagaaaacaacaaaagcactcaacaggaatgacagagcaatt
gttgacgccaatggtgttaccgtctttggaaccaggattctagatgaagaagtttttgag
ggtgatatccagcaactattgattgtagctgatcccagagcagcgtatgactattgtgaa
cattatagcccaatctgtgattcccctgtccccaatgcgcctcaagctcaagaacctcaa
gttgaagagtacgcaactgaagatttaatcgaatatgactatgagtatggggaagcagat
tataaagagtctgacacggtaacagagggacccccacaattcgaggagacaataacacaa
acagaggccaatattgttgatgaatttcaagaagagtatagcgtgactgaaactgactat
gggatttcagagggttcccagactgaggctcccaggcacacaactgaagctaatgagcat
aatcctgttgaagaagtatttgctgaagaatacctaactggagaggattatgattcagaa
cataaaaaaaatgaggatactgaatatggaagcagaggagtagacctcagtgaatctgat
cttctggtagatggagaattaggcgaatatgatttttatgagtataaagaatatgaagaa
aagccaaccaatcccacaaatgaagagtttggtcctggtgttccagcagagactgatatc
acagaaacaagcgtaactgggcatggtgcttatggagaaaaaggacagaagggagaacca
gctgtggtcgaacctgggatgcttgttgaaggaccagcaggaccagcaggacctccaggt
cttacaggtcccccaggtttacagggtcccactggtccttcgggtgaccctggtgagagg
ggtccatcagggcgtcctggcctgccaggtgctgatggtttacctggtcccccaggtacc
atgttgatgttgccgttccgctttggtggagatggtgagaaaggcccaacaatctcagct
caagaagctcaagcccaagctattcttcagcaggcgaggattgctatgagagggccacct
ggccccatgggactcactggaagaccaggtcctgtgggcgggcctggctcaccaggtatt
aaaggagaaagtggcgacccaggtccccagggtcctcgaggtattcaaggttccattggg
ccaagtgggaaacctggcaaaagaggtcgtccaggagctgatggcgctcgaggaatgcca
ggagaacctggttcaaagggtgatagagggtttgatggtcttcctggtctacctggtgat
aaaggtcacagaggagatcgtggcccacaaggacctcctggtgcacccggtgaagacggc
acaagaggagaagatggagaagttggacccagaggtctcccaggtgaagctggtccaaga
ggactactgggccccaggggcacacctggtcccccaggacaacctggttttgcaggtgtt
gatggccccccaggtccaaaaggaaacttgggtcctcaaggggaaccaggacctcctggt
caacaaggaatcccaggtccacaagggcttcctggtccacaaggtcctattggagcccct
ggtgaaaaaggaccacagggcaagcctggccttccgggacttgctggttctgatgggcct
tctggtcatcctggcaaagaaggtcagtctggagagaaaggtgctttggggcctccaggt
cctcagggtccaattggctatcctggtcctcgtggtgtgaagggagctgatggtgtccgt
ggtctcaaaggctccaaaggtgaaaagggtgaagatggtttcccaggatttaaaggtgac
atgggtcttaaaggtgacagaggtgaagttggtccactgggtccacgaggagaagatggc
cctgaaggtccaaaaggtcgagcaggtccaacaggggacccaggtggtgctgggcaagct
ggtgaaaagggtaaacttggggttccaggactgccaggatatccaggaagacaaggtcca
aagggctccactggtttcccaggattcccaggtgccaatggagagaaaggtgcaaggggt
ttacatggaaaaccaggtcccaggggacagcgaggaccaacaggtcctcggggatcaaga
ggcccacgaggtcccacaggaaaaccaggccctaagggcactgcaggcagtgatggccct
cctggcccaccaggtgaaaggggaccacaagggcctcaaggaccagttggattccctgga
ccaaaaggacctcctggcccccctgggaaagatggcttgccagggcacccaggacagcgg
ggtgagactggttttcaaggcaaaactggccccccaggccctggtggtgttgttggaccc
cagggtcctactggtgagactggcccaattggtgaaagaggtcaccctggtcctccaggc
ccaccaggtgaacaaggcctcccaggcgctgcaggaaaagaaggtgctaagggtgaccca
ggccctcaaggtatctctggaaaagatggaccaccaggtcttcgtggtttcccaggagaa
agaggccttccaggtgctcagggtccagctggtctgaaaggaggagaaggcccacaaggc
ccacctggcccagttggttctccaggtgaacgtggatcagcaggaactgctggccctatt
ggtctaccaggccgtccaggtcctcaaggtcctccaggcccagcaggagagaagggtgct
cctggtgaaaaaggtcctcaaggtccagctggacgagatggagtacagggtcctgtaggt
cttccaggtcctgctggtcctggtggttctcctggagaagatggtgacaagggtgaaatt
ggtgaaccaggtcagaaaggcagtaagggtgacaagggagaaaatggtcctccgggtcca
ccaggtcttcaaggtcctgttggtgcccctggcatagctggaggtgatggagagccaggc
ccaagaggtcagcaaggaatgtttgggcagaaaggcgatgaaggtccacgaggattccct
ggtcctccaggtcccattggtcttcagggtctgcctggccctccaggtgaaaagggtgag
aacggtgatgttggtccaatgggtccacctggtcctccaggtccaagaggtccccagggt
cctaatggagctgatggtcctcaaggtcctccaggctctgttggctctgttggaggtgtt
ggtgacaagggtgagcctggggaagctggtaaccctggacctcctggagaatctggccca
ggcggaccaaaaggtgaaaggggagaaaaaggtgaggctggtccacctggagctgctgga
cctccaggtgccaaaggacctccaggtgatgatgggcctaagggtaatccaggtcctgtt
ggtttccccggagatcctggtccccctggtgaacctggccctgctggtcaagatggtact
ggtggggagaaaggagaagatggtgatcctggtcaacctggtccaccaggtccttcaggg
gaagctggcccacctggtcctcctgggaagagaggccctcctggagcagctggtgctgag
ggcagacaaggtgaaaaaggtgcaaagggtgaacctgggtcagaaggtgcacctggaaaa
acaggaccagttggtcctcagggaccttcaggaaaacctggtccagagggtctccgtggt
attcctggccctgtgggagaacaaggtctacctggagcatcaggtcaggatggaccacct
ggtcctatgggtccacctggcttgcctggactgaagggggatccaggttccaagggtgag
aagggacatcccggtctgattggtctgattggacctccaggagaacagggtgaaaagggt
gacaggggtcttccaggtccacaaggagctcttggagccaagggcgatacaggcattcct
ggtcctgctggtccacttggcccccctggccctccaggtttacctggtcctcaaggtcca
aagggttccaaaggatccactggtcctggtggtcaaaagggtgatggtggtttacctggc
cccccaggtcctcccggtcctcctggggaagttatccagcctttgccaatccagtcaccc
aaaaagacaagaagatctccagattacatgctggctgatgcagctgataacatcctggat
tattctgatggcatggaggaaatatttggttcactcaattctctgaagcaagatattgaa
catatgaaatatccaatgggcactcagaacaacccagcccgaacttgcaaagatctacaa
ctctgccacccagacttcccagacggtgaatattggattgatcctaatcagggctgctct
ggagattccttcaaagtgtactgtaatttcacagcgggtggcgaaacttgcatctaccca
gataagaaatccgaaggagtaagattttcatcatggccaaacgagaatccaggagcctgg
tttagtgaatttaagagaggcaaactgctttcctatgtggatgttgaaggcaattccatt
aatatggttcaaatgacgttccttaaactactgagtgcctctgccagacaaaatttcact
tacaactgtcatcagtcagtagcttggcatgatgggccatctgacagctatgacaaagca
ctgaggttcttaggatcaaatgatgaagagatgtcttatgacaacaatccttacatcaaa
gctcttcatgatggctgcgcatcaagaaaaggctatgcaaagactgtgatcgaaatcagt
acacctaaaatagaccaagtgcctattgttgatgtgatgattaatgactttggggatcag
aaccagaagtttggattcgaagttggtcctgtctgtttcctcggttaa
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integrated database retrieval system
