Chelonoidis abingdonii (Abingdon island giant tortoise): 116835452
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Entry
116835452 CDS
T07367
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03013
Nucleocytoplasmic transport
cabi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
116835452 (UPF2)
03015 mRNA surveillance pathway
116835452 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116835452 (UPF2)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
116835452 (UPF2)
mRNA cycle factors
P-body specific factors
116835452 (UPF2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
116835452
NCBI-ProteinID:
XP_032654188
Ensembl:
ENSCABG00000019601
LinkDB
All DBs
Position
Unknown
AA seq
1295 aa
AA seq
DB search
MPAERKKSASMEEKESSLNNKEKDFSERRSVSSREKPKEDLKVGLKRETLKTPEDKKKKL
EEDKRKKEDKERKKKEEDKIKAEEEQKRKEDEEKKKFEEEEKKKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNAPDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFNSLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRET
HAHVSVVISFCRHCGDDIAGLVPRKVKNAAEKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLLD
ENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNEKCSQNKDSSKDESRDSKDAKDNKDVAGSEDLDLDMENLDINYDNLELDCGDEAE
DLTKKLLDEQVCSGRREGADSTGAENSDGKQAERKQEDEETSTGSHLKLIVDAFLQQLPN
CVNRDLIDKAAMDFCMSMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVA
EDLCSMLKGDFKFHVRKKDQINIETKNKTVRFIGELAKFKMFSKNDTLHCLKMLLSDFSH
HHIEMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNP
PPAEKTVRKKRPPLQEYIRRLLYKDLSKVTTEKVLRQMRKLPWQDPEVKDYVICCMINIW
NVKYNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGE
LYNYRMVESAVIFRTLYSFTSFGVNPDGTASPLDPPEHLFRIRLVCTILDTCGQYFDRGS
SKRKLDCFLVYFQRYVWWKKNLEVWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESV
RQVQDLEREFLIKLGLVNDKDSKDSMTEGENLEEEEEEEEGGAETEEQSGNESEVNEPEE
EECSDNDDEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQAL
DKMMLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGETESGDTMPFVMLTRK
GNKQQFKILNVPMSSQLAANHWNQQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQ
RPAPANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3888 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgcaaaaagtcagccagtatggaagaaaaagaatcttcattaaataac
aaagaaaaagacttcagtgaaaggcgatcagtgagcagtagagagaaaccaaaggaggat
ttgaaggttggcctgaagagagagactctcaagacacctgaagataaaaagaaaaaactg
gaggaggataaacggaaaaaagaagacaaggagcgaaagaaaaaagaagaggacaagata
aaagctgaagaagagcagaagaggaaagaggatgaagaaaaaaagaaatttgaagaggaa
gagaaaaagaaacaagaagaggaagtaaaacgtcagcaagaggaggcagctgcacaattg
aaagagaaagaggaagcacatcaactccaccaggaagcttgggagcgccatcaagcaaga
aaggaactccgcagcaaaaaccagaatgcaccagataaccgccccgaggagaatttcttt
agcaggctggactcgagtctgaagaagaacactgcttttgttaagaagctaaaaactatc
acagaacaacagagggactccttgtctcatgattttaatagcctcaatttaagcaagtac
attgcagaagctgtagcttctattgttgaagcaaagctgaaaatatcagatgtgaactgt
gccgtgcacttgtgttctctgtttcaccagcgctatgctgattttgctccatcacttctt
caggtttggaaaaagcattttgaagcaaggaaagaagagaaaactcccaacattaccaaa
ctaagaactgacttgcgtttcattgcagaattgacaatagttgggattttcactgataaa
gaaggtctgtctttaatctatgaacagctaaaaaacattattaacgctgatcgagagacc
catgctcatgtttctgtggtaataagcttttgccggcactgtggagatgatattgctggt
ttggtaccaaggaaggttaaaaatgctgcagagaagtttaacttgagttttcctcctagt
gagataatcagtccagagaagcaacagcccttccagaatttgttgaaggaatactttaca
tctttgaccaaacacctgaaaagggaccacagagagctacaaaatattgagagacaaaac
aggcgtattctgcactctaaaggagagttgagtgaagatcgacacaagcaatatgaagaa
tttgcaatgtcctatcagaagctgttggcaaattctcagtctctggctgatctgttggat
gaaaatatgccggatcttccccaagacaaaccaacaccagaggaacatgggcctggcatt
gacatttttacccctggcaaacctggagaatatgacctggaagggggcatctgggaagat
gaagatgctcgaaatttctatgagaaccttattgatctaaaagcttttgtgccagccatt
ttgtttaaagataatgaaaaatgttctcagaacaaggactccagcaaggatgaatctaga
gattcaaaagatgccaaggataataaggatgttgctggtagtgaggatttggacttggat
atggagaatttggacattaattatgataacttggagttagactgtggagatgaagcagaa
gatctcacaaaaaagcttcttgatgagcaagtatgctcaggcaggagagagggagcagat
agcaccggagctgaaaatagtgacggaaaacaagctgaaagaaaacaagaggatgaagaa
accagtactgggtctcacttaaaactgatagtagatgctttccttcagcaactcccaaac
tgtgtcaacagagatctcatagacaaggcagcaatggatttttgcatgagcatgaacaca
aaagccaatagaagaaaattagtacgagctctcttcatagttcctagacaaaggttggat
ttgctaccattttatgcaaggctggttgccacattgcatccttgtatgtctgatgtagca
gaggatctttgttccatgctgaaaggcgatttcaaatttcatgtgagaaaaaaggaccag
atcaatattgaaacaaaaaataaaactgtgagatttattggagagcttgccaagtttaag
atgttctccaaaaatgacaccctgcattgtttaaagatgcttctgtcagacttttctcat
catcatattgaaatggcatgtactctgctggaaacatgtggaagattcctatttagatcg
ccagaatctcacttaagaacaagtgttcttttggaacaaatgatgagaaagaaacaagca
atgcatcttgatgcgcggtatgtcacaatggtggagaatgcatactactactgtaatccc
cctccagctgaaaaaactgtgaggaagaaacgcccacctctgcaggagtatattcgtagg
cttctttacaaggatctctccaaagtcaccactgagaaggtcctgagacagatgcgtaaa
ttgccctggcaggatcctgaagtgaaagattatgttatatgttgtatgatcaacatctgg
aatgtgaaatacaatagtattcactgtgtagctaacctcttagcagggttggtgctttac
caagaggatgttggaattcatgttgtggatggagtgctagaggatattcgcctaggcatg
gaggttaaccagccaaagtttaatcagcgacggatcagcagtgccaagttcttgggagaa
ctttacaattaccgaatggtagagtcagctgtaatatttcgaacgctgtattcatttaca
tcatttggtgtgaaccctgatggtactgctagtccactggaccctccagaacatcttttc
cgaattagactcgtctgcaccatccttgatacctgtgggcaatattttgacagaggttcc
agcaaacgcaagcttgattgcttccttgtgtactttcagaggtatgtttggtggaaaaag
aatttggaagtttggacaaaagaccatccatttcctattgacattgactatatgataagt
gatacgctagaactgttgagaccaaagataaaactctgcaattctctggaagaatctgtc
aggcaggtacaagacttggaacgagaattcttaataaaactaggccttgtgaatgacaaa
gattcaaaagattctatgacagaaggagagaatctggaagaagaggaagaggaggaggaa
ggtggtgcagagacagaagaacaatctggaaatgaaagtgaagtaaatgagccagaggaa
gaggagtgctcagacaacgacgatgaggaaggtgaggaagaagaagaagagaacactgat
tacctcacagactcgaataaggagaatgaaactgatgaagagaacacagaagtaatgatt
aaaggaggaggacttaaacatgttccttgtgtagaggatgaggacttcattcaggcattg
gataaaatgatgctggagaatcttcagcaacggagtggagaatctgttaaagtacatcag
ctggatgttgctattcctctgcatcttaagagtcaactaaagaagggtccacccttgggc
ggtggggaaggagaaacggagtcaggagacacaatgccatttgtcatgttaactcgaaaa
ggcaacaaacaacagtttaagatcctaaatgtgccaatgtcttcccaacttgctgcaaac
cactggaatcaacaacaggctgagcaagaggagagaatgagaatgaagaagctcactctg
gatattaatgaacggcaagaacaagaagactatcaggagatgttacagtctctggcacag
cgtccagctccagcaaatactaatcgtgaacggcggcctcgttaccagcatccgaaggga
gcacctaatgcagatctaatctttaaaactggtgggaggagacgttga
DBGET
integrated database retrieval system
