Chelonoidis abingdonii (Abingdon island giant tortoise): 116835973
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Entry
116835973 CDS
T07367
Symbol
VARS1
Name
(RefSeq) valine--tRNA ligase
KO
K01873
valyl-tRNA synthetase [EC:
6.1.1.9
]
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
116835973 (VARS1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
cabi01007
]
116835973 (VARS1)
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cabi03016
]
116835973 (VARS1)
Enzymes [BR:
cabi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.9 valine---tRNA ligase
116835973 (VARS1)
Amino acid related enzymes [BR:
cabi01007
]
Aminoacyl-tRNA synthetase
Class I (U)
116835973 (VARS1)
Transfer RNA biogenesis [BR:
cabi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Other AARSs
116835973 (VARS1)
Prokaryotic type
116835973 (VARS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Anticodon_1
GST_C
tRNA-synt_1_2
tRNA-synt_1g
GST_C_2
Arc1p_N_like
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
116835973
NCBI-ProteinID:
XP_074927603
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All DBs
Position
12:complement(2139000..2154953)
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AA seq
1075 aa
AA seq
DB search
MPTLYLSPHPENFQNHRVLIAAHYAPTLPEVVELPEQGLPLQPPASCPLPKLPALESRPG
VWVSGPAAVAHLLCPEQLRGQGPAGGALVQQWVSYAEGEIAPAACAAAFSALGLVEQSKQ
VVERAVAELHRALAVLDGRLKLHTYLVAEAVTLADVTVACALLLPYKYVLDPPSRAVYPN
VTRWFLTCVNQPQFQAVLGPVKLCEQARGGDAPKPKMQEPVVPAEMGPAAGSAPGPGEAP
VKSASQLKKEAKKKEKLEKFQQKKEKSQQQQGEKKAKAEKKEKKDPGVLTYDIPTRPGEK
KDVTGPMPDAYSPQYVEAAWYPWWESQGFFKPQYGRQCVSEPNPKGLFMMCIPPPNVTGS
LHLGHALTNAIQDALTRWHRMRGETTLWNPGCDHAGIATQVVVEKKLWRERGQTRHELGR
EAFIREVWKWKNEKGDRIYHQLKRLGSSMDWDRACFTMDPKLSYAVQEAFVRLHEEGVIY
RSKRLVNWSCTLHSAISDIEVDKKELSGRTLLPVPGYKGKVEFGVLVSFAYKLEDSDEEV
VVATTRVETMLGDTAVAVHPQDPRYQHLHGKRVLHPFTGRHMPIVCDDFVDMGFGTGAVK
ITPAHDHNDYEVGQRHGLECVTIMDDSGCLINVPPPFLGMKRFEARGAVLEALKQKGLFK
EVKDNPMVVPVCSRSKDVVEPLLKPQWYVRCEGLARGAADAVRRGDLRILPPFHCKTWFQ
WMDNIRDWCISRQLWWGHRIPAYFVTVDDPSVPPGEDTDGRYWVSGRSEEEAKDKAAKAF
GVTPDKISLRQDLAVFQVYLHAVVRDAHGRKMSKSLGNVIDPLDVISGITLEGLHAQLLE
SNLEPAEVERARQGQKSDYPAGIPECGTDALRFALCAYTSQGRDINLDVNRILGYRHFCN
KLWNATKFAVRSLGAEFQPPPGPEPSGAESLIDRWILSRLSLAVELSDAGFQAYDFPGVT
TAIYNFWLYELCDVYLECLKPVFAEGEAAAVAAARCTLYTCLDTGLRLLSPFMPFVSEEL
FQRLPRRTPHAPPSICVTPYPSPEQPPAACPLQLQQSQTELQKVMEAIETFQRMI
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccctgtacctctccccgcacccggaaaatttccagaaccaccgggtgctgatc
gcagcccactatgcccccacgctgcccgaggtggtggagctgccagagcaggggctcccc
ctgcagccccctgcctcctgccccctgcccaagctgccggcgttggagagccggccgggg
gtctgggtctcaggcccggctgccgtggctcatctcctgtgcccggagcagctgaggggg
caggggccagctgggggcgcgctggtgcagcagtgggtgagctacgctgaaggggagatt
gcccctgccgcgtgcgcagccgccttctccgccctgggtctggtggagcagagcaagcag
gtggtggagcgggcggtggctgagctgcaccgggcgctggccgtgctggacgggcgcctg
aagctgcacacgtacctggtggctgaggctgtgacgctggcggacgtgaccgtggcctgt
gccctgctgctgccttacaaatacgtgctggatcccccgagccgggctgtttaccccaac
gtcacacgctggttcctgacttgtgtcaaccagccccagtttcaggccgtgctggggccg
gtgaagctgtgtgagcaggcgcgtgggggtgatgcccccaaaccaaagatgcaggagcct
gtggtgcctgcagagatgggaccagcagcagggtcagcccctggccctggggaggccccg
gtcaagagtgcctctcagctgaaaaaagaggcgaagaagaaagagaagctggagaaattc
cagcagaagaaggagaaaagccaacagcagcagggggagaaaaaagcaaaagctgagaag
aaggagaagaaagaccctggcgttctgacctacgacatccccacgcgcccgggggagaag
aaagacgtgactggccccatgcccgacgcctacagcccgcagtacgtggaggcagcctgg
tacccatggtgggaaagccagggcttcttcaaacctcagtacgggcggcagtgcgtctcg
gagccgaaccccaaaggtcttttcatgatgtgcatcccaccccccaacgtcaccggctcg
ctgcacctgggccacgcgctcaccaacgccatccaggacgccctgacccgctggcaccgg
atgcgcggcgagacgacgctgtggaacccgggctgcgaccacgccggcatcgccacacag
gtggtggtggagaagaagctgtggcgggagcgggggcagacgcggcatgaactgggccgg
gaggccttcatccgcgaggtctggaaatggaagaacgagaagggcgacaggatctaccat
cagctcaagaggctcggatcatccatggactgggatagagcctgcttcacgatggacccg
aaactgtcctatgctgtgcaggaagccttcgtccggctgcacgaggagggggtgatttac
cgcagcaaacgcctggtcaactggtcctgcaccctgcactctgccatctccgacattgag
gtggataagaaggagctgtccggccggaccctcctgcccgtccccgggtacaagggcaag
gtggaatttggggtgctggtgtcattcgcctacaagctcgaggactcagacgaggaggtt
gtcgtggcgacgacgcgggtggagaccatgctgggggacacagccgtggcggtgcatccg
caggacccccgataccagcatctccatgggaagcgcgtcctgcaccccttcaccggccgt
cacatgcctatcgtctgtgacgacttcgtggacatgggcttcgggactggtgcggtgaag
atcaccccggcccacgaccacaacgactacgaggtggggcagcgccacggcctggagtgc
gttaccatcatggatgacagcgggtgcctcatcaatgtacctccccccttcctgggtatg
aagcggttcgaggcccggggggctgtgctggaggccctgaagcagaaggggctgttcaag
gaagtgaaggacaaccccatggtggtgccggtgtgcagccgctcgaaggacgtggtggag
ccgctgctgaagccgcagtggtacgtgcgctgcgaggggctggcccggggggcggccgac
gccgtgcgccgtggggacctgcgcatcctgccccccttccactgcaagacctggttccag
tggatggacaacatcagggactggtgcatctcccggcagctatggtggggccaccgcatc
ccggcctattttgtcaccgtcgacgacccctcggtgcccccaggagaggacacggatggc
cgatactgggtgagtgggcggagcgaagaggaggccaaggacaaagcggccaaggccttt
ggggtgaccccggacaagatctcactgcgtcaagacctggctgtgtttcaggtttacctt
catgccgttgtccgcgacgcccacggcaggaaaatgagcaagtcattaggcaacgtcatc
gacccgctggatgtgatcagcggtatcacgctggagggtttgcatgcgcagctcctggag
agcaacctggagccggccgaagtggagcgagccaggcagggccagaaaagcgattaccct
gctgggatcccggagtgcggcacggacgccctgcgcttcgccctctgcgcgtacacctcc
cagggccgcgacatcaacctggacgtgaaccgcatcctggggtaccggcacttctgcaac
aagctctggaacgccaccaaattcgctgtccgcagcctgggggccgagttccagcccccg
cccggaccagagcccagcggcgccgagagcctgatcgatcgctggatcctgagccggctc
agcctggccgtggagctgagcgacgccgggttccaggcctacgacttcccgggcgtcacc
acggccatctacaacttctggctgtacgagctctgcgacgtctacctggagtgcctgaag
cccgtgttcgccgagggggaggcggctgcggtggcggccgcccgctgcaccctctacacc
tgcctggacaccggcctgcggctcctctcccccttcatgcccttcgtcagcgaggagctt
ttccagcgcctgccccgacgcaccccccatgcgccccccagcatctgtgtcaccccctac
cccagccctgagcagcccccagccgcgtgtcccctgcagctgcagcagagccagaccgag
ctgcagaaggtgatggaggcgattgagactttccagaggatgatctga
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