Chelonoidis abingdonii (Abingdon island giant tortoise): 116836295
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Entry
116836295 CDS
T07367
Symbol
CSPG4
Name
(RefSeq) chondroitin sulfate proteoglycan 4
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cabi00535
]
116836295 (CSPG4)
04091 Lectins [BR:
cabi04091
]
116836295 (CSPG4)
Proteoglycans [BR:
cabi00535
]
Cell surface proteoglycans
Others
116836295 (CSPG4)
Lectins [BR:
cabi04091
]
C-Type lectins
Others
116836295 (CSPG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
116836295
NCBI-ProteinID:
XP_032655728
Ensembl:
ENSCABG00000017808
LinkDB
All DBs
Position
Unknown
AA seq
2390 aa
AA seq
DB search
MRNANGWSTLGYIMGSSDLPTALLLLQLTLQMQPLHAGPESGASFFGDGYVEMPLVEVYS
TVQLHLQFSTSQRSGLLFLAAGQTDYLLVELRSGVLQVRLELGSEEVMFQSPAGPRLNNL
VTHDAELLVGDGRMTLTVDGLFNTSVEIPGPLQQLDIQYGLYVGGTGSLELPYLTGSSSP
FRGCLHMAKFNGLNILSPWASDAASTMFHEVREGCSEEFSAGPDDPFGFLGPRSYIAFPG
WSAREEGTIEFVITTSIKHAPLIYQSGLQNDFLYLEIYDGRLRGVVEKGNGAVILHNNIF
ISDEQQHYVKLHVDIYKFEILVDYYASRTSNRGIHSYLDLQGSLFVGGMNENASRRLKER
RLAFTSGGSTANSSFIGCMEDLRVNLEKKSLQDALVTKDITPGCRMQEQYSDYEDAYERD
EAPTTPTPVVWQEALGPVVEPCHLDPNLPPAFANFTKLLDFSPLVVTEGSTAFLEWQHTQ
PTIDLSSANIRQSQVLFSVTNEPRHGQLELDIHSSRSRRKFTLLDIANRKVKYVHDGSEG
PMDQLMLEVTVTTRKGVPECLWQGQTYLLPIKINPINDAPQVIFPHGDLMVILEHTRKHL
STDIIQALDDDTPCDSLKFQLLGGKRMEEGYVEYDFKPGVPTEEFSCRDLETGNVVYVHQ
NGPALQVIFQVSDGLVRSPVATLRVIAIEPDIQVRNNTGLFVAQGSAVPITTANLSVETN
AVKQRVNILYRLTEPLWYGEVQKQGSMGGEWKRVESFQQQDIVQGRIQYFSMDPEHHLED
VMEKLRFEIQVGQKTLSNNTFLIRIKKATIKMKTLVPLQMKNKRHQNITTREMEAALEDP
SSDPVSFYYMIIQAPKKGNLELLGSRLTEGFGFTQQDLQRKHLSYSATIRNSKETEDSFQ
FRVTADAQYSPMYTYMISIGGDPDAPVLTNVLLSVLEGGQAVISKDHLFVRSLNNMDYLY
EVIEGPTHGKLVWRTPSNWPSHEKVITEFTNEDILQGRLLYQHDNSETTEDDIPFVAVKQ
DEGSADSDTEEVRGVFRVSIQPVNDHPPVQVVSKVFNVVRNGQRLLTTNDIAFTDQDSGF
SDTQLVLMRKDILFGSIISIDDRSRQVYRFTQDDLRKKKILFVHSGADRGWIQLQVSDGL
HQTAALLEVQASDPYIQIVNNTGLVIHQGSQGTIDSSILSLETNMDIRNDEEIWFQITTL
PRWGVVLKGGQPVTSFSQKDLLAGEVIYQHNSSRNAKDKFQFSVEANQVAVEDTMEITVF
LDTHPSPLTIIHHEKIHIFQGEPVEIKKDYLLVVHEDIPSQEIIYLVTSPPRLGSLMMVY
HSGTSDEPPILNPIQSFTQEDINESQVLYLHSGPDMQSDQFTVDITASGVETLEGIVVDL
EVLPFSVPLDIHNITVTEGNSITLSTDILTIPSAYFTALNVEFMVPEPPRHGIIQNMVRP
EEGNLHFFTWNEVEQQLIQYIHDGSESLADSFTIVANASEVNQQSQPKAISITVVPRNDE
RPTITINAGLQMQEGTTADITPDILRSEDEDSLPEEVVYSIRPPANGMVVLKSSPSNGIL
QFTQAQINSGLVQFVHEGPLDGGFSFNLSDGENISPRHFFTVSAQKKLVITLENKQDLTL
CPGTLQPITSQNLKAVTNSKADSRPLFYSIEEPPQLGRLVKYHLGSASGPLENFTQAEVD
SGIIFYQHDMPQQPFWFTQDAFHFRVSFPPTVTDSYVLGVLVSFEASCSQPSTKLWRNQG
LRILEAQRAQIDTSVLDASNLLTKVPESKRASYDVVFLVTELPTHGHLSVADVSISKEHP
YFLQSDVVMGNLQYAHHGSGTQEDNFRFKAWLRSRAMESTRPPQEGGGLVISEAFNITVS
EISEKPPRLTKHGHALQVRQGSSAVLSQDHLDVVDPDSSPEEIEYRILKGPSNGFLANTH
NKQVPINQFTQADINAGHLMFITNGSGSPGSLEFSISDGHNPSIFTSLEIEVLPEVTTVM
SQIPLEIPQGLNIASLSREHLLGASHPGEQEVHYTITRDPKFGQLRVNQSPARSFSQKQV
DNGEVTFTFTDFTSAKDEFQFLSMSKGVNTSGVVNVTVKALVRTWQEIRWPRGTTTLLNT
RVLDASELANKTNSIPAFTILRAPQSSHFVRVSGDKESQHASIDTFTQQDLEQGLVGLQV
LEMEDAGHHLLNDSFLFELAADGVPPALEFLGYSTEPYNSSMPYGTPLLRAPHLPETNDR
QTPQEVSPSSETVATQPQGSDHLSHNTSKHDMLPTATGGHEATTSPSPLEGGTFLSFIEA
NMFSVIIPICLILLLLALILPLIFYLHKRNKTGKHNVQGTTSKPKNGAVVDQETFRKTDP
NQAIPLTTVNPLEAKESGPTGKGPRGQQEPELLQYCRTSNPALKNNQYWV
NT seq
7173 nt
NT seq
+upstream
nt +downstream
nt
atgaggaatgctaacggctggtccactctaggttacatcatggggtccagcgatcttccc
acagcactgctgctgctccagctcaccctgcagatgcagcccctccacgcaggaccagag
tctggagcctctttctttggagatggctatgtggagatgcccttggtggaggtgtacagc
acagtccagctccacctgcagttttcaacaagccagcggagcgggctcctcttcctggct
gcaggacagactgactatctcctggtggagctccgctctggcgtcctgcaggtcagacta
gagctgggctcagaagaagtgatgttccagtctccagcagggccacgcctcaataatcta
gtaacccatgatgctgagctgttggtgggagacggtaggatgactctgacagtggatggc
ctctttaatacctctgtggagatcccaggtcccctacagcagctggacattcagtacggc
ctctatgtgggtgggacagggagtctggagctgccatacctcactgggtccagctctcca
ttcagaggctgcctccatatggcgaagttcaatggcctcaatattctctctccatgggca
tctgatgctgcctctacgatgttccacgaggttcgagaggggtgcagcgaggagttctct
gctggtccagatgacccgttcggcttcctgggcccacgctcttatattgctttcccgggg
tggagcgcgagggaagaagggactatcgagtttgtgatcacgacgagcatcaagcacgct
cccctgatctatcagtcggggctgcagaatgactttctatacctggagatctatgacggg
cgcctgaggggggtggtggagaaaggcaatggggccgtcatcctgcacaataacatcttc
atcagtgacgagcagcagcactatgtgaagctccatgtggacatctacaagtttgagatc
cttgtcgactactatgcctcgaggacttccaacaggggcatccacagctacctcgatctc
cagggcagcctctttgtcggcggcatgaatgaaaacgcctcccgcaggctaaaggaacgc
cggcttgctttcacttcagggggcagcactgccaacagctcctttatcggctgcatggag
gacctgagggtcaacctggagaagaagagcctgcaagatgctctagtcacaaaggacata
acacccggctgcaggatgcaggagcagtactcagattatgaggacgcatatgagcgggat
gaggcacccaccaccccaactcctgttgtttggcaggaagcattagggccggtggtagaa
ccatgccaccttgaccccaacctccctccagcctttgctaacttcaccaaattgctggac
ttcagtcccctggtcgtaactgaaggaagcacggccttcctggaatggcaacatacccaa
cctacaatagacctaagcagcgcaaacatcagacagtctcaagtcctctttagtgtcaca
aacgaacccaggcatggccagctggaactagacatccacagctctaggagcagaaggaaa
ttcacattgctagacatagcaaatcggaaagtcaagtatgttcatgatggctccgaaggt
cccatggatcagctgatgctggaggtaaccgtcacaacccgaaagggggttcctgagtgt
ttatggcaaggccagacatacctgctgccaataaagattaatcccatcaatgatgccccg
caggtgatctttccccatggagacctcatggtgattctggagcacacgcgaaagcatcta
agcacggacatcatccaggcccttgacgacgacacaccctgtgacagtttgaaattccag
ctgcttggcggcaagaggatggaagaaggttacgtggaatatgactttaagcctggggtg
cccacagaagagttttcctgcagggacctggaaacaggcaatgtggtctatgtccaccag
aatggcccagcattacaggtcatcttccaagttagcgatggcttggtaagaagcccagtg
gccactttaagagtcatcgctatagagcctgacatccaagtgcgcaacaacactggactg
tttgtcgcacaaggaagtgccgttccaattaccacagccaacctctctgtggagaccaat
gccgtgaaacaaagagtgaacatcctgtatcgcctcacagagcctctctggtatggcgaa
gtccagaagcaagggagcatgggaggggagtggaagagagtagagtccttccagcagcag
gacattgtgcaagggcgcatacagtacttcagcatggatcctgagcaccatctggaagat
gtaatggagaagctgaggttcgagatccaagttggccagaagaccttatcaaacaacact
ttcctaatcaggatcaagaaggccaccatcaagatgaagaccctggtcccccttcagatg
aagaataagcggcaccaaaacatcactaccagagaaatggaagcagcattggaggatcca
agctctgacccagtttccttctactacatgataatccaggcaccgaaaaaggggaacctt
gagcttcttggtagcaggctgacagagggctttggatttacccaacaggacctgcagaga
aaacaccttagctacagtgcaacaatccgaaactctaaagagactgaagactctttccag
ttccgtgtcactgctgatgcccagtattcccccatgtacacctatatgataagcattggg
ggggatccagatgcacctgtcctgaccaatgtccttctatctgtcctggaaggagggcag
gctgtcatctccaaggaccacctctttgtgaggagtttgaataacatggactacctgtat
gaggtgattgaagggccgacgcatgggaagctggtctggaggacaccatccaactggcct
tcccatgagaaggtcataacagagttcaccaatgaagacattctccagggcaggcttctg
tatcagcatgacaactctgagaccacagaggatgatatcccatttgtggccgtcaagcag
gatgagggtagtgctgactctgacacggaggaggtgagaggtgtcttcagagtctccatc
cagcccgtcaatgaccacccgccagtccaggtagtgagcaaggtcttcaacgttgtgcgg
aatgggcagcgcctgttgaccaccaatgacatcgccttcacagaccaggactctggattc
tctgacacacagctggtgctgatgaggaaggacattctctttggtagcatcatttccatt
gatgacaggagccgccaggtgtatcgcttcacgcaggatgacttgaggaagaagaagata
ctctttgtccattccggagcagaccggggctggatacagctgcaggtctccgacggcctg
caccaaactgcagccctcctggaagtacaagcctcagacccctacatccaaattgtcaac
aacactggcttagtcatccaccaagggagccaggggaccattgactcctccatcctcagc
ttggagaccaacatggacataaggaatgacgaggaaatctggttccagataactaccctg
ccaaggtggggggtagtactgaaagggggccagccagtgacttccttctcccagaaggat
ctgctggcaggagaagtgatctatcagcacaacagcagcaggaatgccaaggacaagttc
cagttctctgtggaagctaaccaggtggctgtagaagacacgatggaaatcactgtgttc
ctggacacccatcctagtcccctgaccatcatccaccacgagaagatacacatcttccaa
ggagaaccggttgagattaagaaagactatttactggtagtccacgaggacatcccttct
caggagattatctacttggtgaccagtcccccgcgcttaggatccctgatgatggtttac
cacagtggcacctccgacgagcctcccatcttaaaccccattcagtcctttacccaggag
gacatcaatgaaagccaagtgctctacctgcactctgggcctgacatgcagagtgaccag
ttcactgtggacatcacagctagtggggtagagaccctagaggggattgtggtggacctg
gaagtccttcccttttcagtccccctggacatccacaacatcacagtgactgaagggaac
tccataaccctctccacggacatcctgaccatccccagcgcctatttcacagccctgaat
gtggagttcatggttcccgagcccccgagacacggcatcatccagaacatggtcagacct
gaagagggcaatctgcacttcttcacctggaatgaggtggagcagcagctcatccagtac
attcatgatggcagcgagtccctggccgatagcttcaccattgtggccaacgcctccgag
gtcaaccagcagagccagcccaaggccatctccatcactgtcgtgccacgcaacgacgag
aggcccacaatcaccatcaacgccgggctgcagatgcaggaaggtaccaccgcagatatc
actcccgatatcctgagaagtgaggatgaggactcccttccagaggaagtggtttattcc
atcaggcccccggccaatgggatggttgtgctgaagtcatctcctagcaacgggatcctc
cagttcactcaggctcagataaatagtgggcttgttcagtttgtgcatgaaggacccctt
gatggtggcttctccttcaatctatctgatggcgagaacatctcccccaggcatttcttc
actgtgagcgcccagaagaagctggtcatcaccttggaaaacaaacaggatctcactctg
tgtccaggaacccttcagccaatcacaagccagaatttgaaagcagtaaccaacagcaaa
gcagattcccgtcccttattttacagcatagaggagcccccacaactgggcaggctggtg
aaataccatctgggcagtgccagtgggccactggagaacttcacccaggctgaggtggat
agtggaataattttttaccagcatgacatgcctcagcagccattctggtttacccaggat
gcttttcacttccgagtctccttcccgcccacagtaaccgattcatacgtccttggagtg
ctggtctcgttcgaggcaagctgttcacaaccctcaacgaagctgtggagaaaccaaggc
ctcaggatcctggaagctcaaagagcacaaattgacacctcagtgctggatgcttccaac
ctgttgaccaaagttccggagtccaagcgggcatcctatgatgtagtgttcctagttacg
gagttgcccacccatgggcacctttctgttgcagacgtatccatcagcaaagagcatccc
tacttcctgcagtctgatgtggtcatgggtaacctgcaatacgctcaccatgggtctggg
acccaggaagataatttcagatttaaggcttggctgcgatctagggctatggagtctact
cggcctccacaggaaggagggggcttggtcatttctgaagcattcaacataacagtgagt
gagatcagtgagaaaccacctcgcctcacaaagcatggccatgctctgcaggttcgccaa
ggctcctcggcagtgctctctcaggatcacttggatgtagtagatcctgacagttcccct
gaagagattgaatacagaatcctcaaggggccatccaatggcttcctggccaacacacac
aacaaacaggtgcctatcaatcagttcacccaagcagacatcaatgccgggcacctaatg
ttcatcaccaatgggagtggttctcctgggtccttagagttcagcatttctgatgggcat
aatccatccatcttcacttctctagagattgaggttctgcctgaagtaaccacagtgatg
agccagatacccctggaaataccccagggcctaaacattgcatcgctgtcccgagaacac
ctcctgggggcatcacacccaggggaacaagaggtccattacacaatcaccagggatcca
aaatttggccagctgagggtcaatcaaagcccagcgagaagcttttcccagaagcaagtg
gacaatggtgaggtgacttttactttcacagatttcacttccgccaaagatgaattccag
ttcctctcaatgtccaaaggagtaaacacatcgggggtagtgaatgtgacagtcaaggcc
ttggtcaggacatggcaggagattcggtggccgaggggaaccaccacccttctgaacacc
agggtccttgatgccagtgagctggccaacaagacaaacagcatcccagcttttacaatc
ctcagagccccccagagcagccattttgtgagagtctcaggagacaaagagagtcagcat
gcgtccattgataccttcacccaacaggacctcgagcaagggctggtcgggctgcaagtt
ctggaaatggaagatgctggccatcacttgttgaatgacagctttctgttcgagcttgca
gctgatggggtgccacccgccctggaatttctggggtatagcacagagccgtacaactca
tccatgccgtatggaaccccgctgctcagagccccccacctcccagagacgaatgacagg
caaacgccccaagaggtgagcccctcctcagaaacagtggccactcagccccagggctct
gaccatctgagccacaacactagcaagcacgacatgcttccaacagccacggggggccac
gaagccaccacaagcccctctcccttggaggggggcacattcctcagcttcattgaagcc
aacatgttcagcgtgatcatcccaatctgcctgatcctcctgctcctggcattaatcctt
cccctgatcttttatctccacaaacgcaacaagaccgggaagcacaacgtccaggggaca
acttccaaacccaagaatggggcagtggtcgaccaggaaaccttccgcaagactgaccca
aaccaagccattcctttaacgactgtgaaccctctggaggccaaagaatcggggcccacg
ggcaaagggccaagagggcagcaggaacccgagctacttcagtactgcaggacatccaac
cctgctttaaaaaataaccagtactgggtctga
DBGET
integrated database retrieval system
