Chelonoidis abingdonii (Abingdon island giant tortoise): 116836655
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Entry
116836655 CDS
T07367
Symbol
VCP
Name
(RefSeq) transitional endoplasmic reticulum ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04137
Mitophagy - animal
cabi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
116836655 (VCP)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
116836655 (VCP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116836655 (VCP)
03009 Ribosome biogenesis [BR:
cabi03009
]
116836655 (VCP)
04131 Membrane trafficking [BR:
cabi04131
]
116836655 (VCP)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cabi04147
]
116836655 (VCP)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
116836655 (VCP)
Ribosome biogenesis [BR:
cabi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
116836655 (VCP)
Membrane trafficking [BR:
cabi04131
]
SNARE
SNARE associated proteins
Others
116836655 (VCP)
Autophagy
Aggrephagy
Other aggrephagy associated proteins
116836655 (VCP)
Exosome [BR:
cabi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
116836655 (VCP)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_16
AAA_5
AAA_33
AAA_2
AAA_22
TIP49
AAA_14
NPHP3_N
RNA_helicase
AAA_28
Vps4_C
nSTAND3
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
AAA_7
ATPase
AAA_18
DUF815
ABC_tran
IstB_IS21
nSTAND_NTPase5
NB-ARC
TsaE
AAA_24
ResIII
NACHT
Sigma54_activat
Viral_helicase1
SLFN-g3_helicase
Zot
Motif
Other DBs
NCBI-GeneID:
116836655
NCBI-ProteinID:
XP_032656291
LinkDB
All DBs
Position
6:2812895..2836084
Genome browser
AA seq
761 aa
AA seq
DB search
MDELQLFRGDTVLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPC
PDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKV
VETDPSPYCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLR
HPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESN
LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMA
ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG
HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALR
ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKT
LLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKA
RGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI
PLPDEKSRIAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIEN
EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS
RGFGSFRFPSGNQGGAGPSQGPGSGSGGNVYSEDNDDDLYG
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atggatgaattgcagctgttcagaggagacacagttctgctaaaaggaaagaagaggcga
gaagcagtctgcattgtcctgtcagatgatacctgctcagatgagaagattcgcatgaat
agggttgttcgtaacaacctgagagtgcgccttggtgatgtgatcagcatccagccctgc
ccagatgtgaagtatggcaaacgcatacatgtgttaccgattgatgacacagtggaaggg
atcaccgggaatctgtttgaggtctacctcaaaccatacttcctggaagcatatagacca
atcagaaaaggtgacatcttccttgtgcgtggagggatgcgcgctgtggagttcaaagtg
gtggagacagacccaagcccttactgtatagtggctccagatacagtgatccattgtgaa
ggggagcctatcaaaagagaggatgaggaagagtccctgaatgaagtgggctatgatgac
attggaggctgccggaagcagctggcccagatcaaggagatggtggagcttccgctcaga
caccctgcacttttcaaggccataggtgtgaagcctccacgtggaatcctgctgtacggc
cctcctggtaccggtaagaccctgattgcacgtgcagtggctaacgaaactggagctttc
ttcttcctgatcaatggccctgagatcatgagcaagctggctggtgagtctgagagcaat
ctcaggaaagcttttgaggaagctgaaaaaaatgcgcctgccatcatctttatcgatgaa
ctggatgccattgctccaaagagggagaagacgcatggagaggtggaacgtcgcatagtg
tctcagctgctgactcttatggatgggctgaaacagagagcacatgtgattgttatggca
gctaccaacagacctaacagcattgaccctgcactcaggcgattcggtcgctttgacaga
gaggtagatatcggtatccctgatgccaccggccgcctggagattctgcagatccacaca
aagaatatgaaactggctgatgatgttgatctggagcaggtggccaatgagacccacggc
catgttggtgcagacttggctgctctttgctccgaagctgctcttcaggccatcaggaag
aagatggatctcatagacctggaggatgaaaccatagatgctgaagtgatgaattcactg
gctgtgaccatggatgacttcaggtgggctctgagccagagcaacccctcagctctgcgg
gagaccgtggtggaggtgccacaggttacctgggaagatattggtggtctagaagatgtg
aagagagaactccaggagcttgtgcagtatcctgtggagcacccagacaaattcctcaaa
ttcggcatgactccatccaaaggggtcctgttttatggaccacctggctgtggtaagaca
ctgctggctaaagccattgccaacgaatgccaggccaacttcatctccatcaaggggcca
gagcttctcaccatgtggtttggtgagtctgaagccaacgtgcgtgagatctttgacaag
gcccgccaagcagcaccctgcgtgctcttcttcgatgagcttgactccattgcaaaggct
cgaggtgggaacatcggggacggtggtggcgccgcagaccgtgtcattaaccagattctg
acagagatggatggcatgtccaccaagaagaacgtcttcatcatcggtgctaccaacagg
ccagacatcatcgacccggccatcctgcgtcctggccgcctggatcagctcatctatatc
cccctgcctgatgagaagtcacgaatcgccatcctcaaggccaacctgaggaagtccccc
gttgccaaggatgtggacctggagttcctggcgaagatgaccaacggcttttcgggagct
gacctgaccgagatctgccagcgtgcctgcaaactggccatccgcgagtccattgagaac
gagatcaggcgagagcgtgagaggcagaccaacccttctgccatggaggtggaggaggac
gacccggttccggagatccgcagggatcactttgaggaggccatgcgctttgctcgccgc
tctgtcagtgacaacgacatcaggaaatacgagatgtttgcacagactctacagcaaagt
cgcggctttggcagcttcagattcccatcaggtaaccagggtggtgctggcccgagccaa
ggcccaggcagtggcagcggagggaacgtgtacagtgaagacaacgacgacgatctctat
ggttaa
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