Chelonoidis abingdonii (Abingdon island giant tortoise): 116836902
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Entry
116836902 CDS
T07367
Name
(RefSeq) LOW QUALITY PROTEIN: sodium channel protein type 5 subunit alpha-like
KO
K04838
voltage-gated sodium channel type V alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04261
Adrenergic signaling in cardiomyocytes
cabi04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
116836902
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
116836902
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cabi04040
]
116836902
Ion channels [BR:
cabi04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
116836902
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
CcmD_alt
Motif
Other DBs
NCBI-GeneID:
116836902
NCBI-ProteinID:
XP_074919480
LinkDB
All DBs
Position
2:14989902..15093692
Genome browser
AA seq
1617 aa
AA seq
DB search
MDHFSLSSDDIGFHLFTCESLATIEKRIAEKKTEQAKAKLENCVQQAKVEKRQPRPYLRA
CEKLPALFGNPPLELIGEPLEDLDPYYNDHKTFMVLNKEKTIFRFTATRALCILSPFHPI
RRAAIKVFVHPYIFAGIYTCEILIKVLASGFVWNQFTFLRDPWNIMDLIIIMVXFYRYVT
LCAHRSQYSYFQIFRLFIFLKALSIIPDLRVVVDALIQSIKKLAEVIILIVFCLSVFALV
GLQLFMGNLKMKCVQNYSCQKIGDNPDFGYTSFDHFGWAFLSVFRLMTQDNWERLYRQTI
RTSGKTYMIFFVVVIFLCSFYLFNLILAVVTMAYEEQNNATLAKTQAKKKLCQEAEELLR
KEQVCTLLCTVQNTLSINYLTFPLSSFPLKLEESKRKCPSCWNRFAQKYLIWNCCPLWIQ
LKKKVKLIVMDPFTDLTVTVCIVVNTIFMALENHNTTPGFSLSLSQVFIGIFTAEVIFKI
IALDPYYYFQRGWNIFDSIIVMISLISRIWAFNIDFFRLLRIFKLSRSWQGLNKLVKIMC
QSVGALGSLELVLCITVFIFALVGRQVFGQCYFNCAKISTDCKLRWHMMDFFHSFLIIFR
ILCGEWIETLWDCMKVAGKELCLPFFLLVLMVGKLVVLNLFIALLLNSWNIDDPATPDAA
EKRTKLQLAFSRIHMGLQFVIHMTGDLCCKILRQGLKTMTSRKVTVKVTTQNVGGNDHAT
IDMGENYTDNGIYQNKEKSPMAKEYEDFLTNSNTFVCVPLAEAECYSEDYDDENSTYTEM
EYTAMELAGIIQSTEKLDAPKDCFTEGCVQCSLCCAVDITKFPGSTWWRFRKTCYQIVQN
SWFETFIIFLILLSSGTLAFEDIYLEKYETLQKLLMLADIIFAYIFLLEIFLKWVAYGFQ
KYFTNFWCLLDFFTVCVSITFNLNQKVLTRTELCGSQHIKSFRILRALRPLRALSRLEGI
KVVVYALVGAIPSIMNVMLICLVVWLPFNILGVKVFSGKFWKCTNLSSDLIDQINYRSDC
EIHSQRQSLKWENAKVTFDHVGMGYLALLQVATFKGWMDIMYAAVDSSDVDQQPKFENRV
YMYLYFVCFIMIGSFFMLNLFVGIVIKNFNQQRKKISGDHLFLTKEQKKYYNALKKLGSK
KPQKPIPRPLNKYQGFFFDVVSSKAFEITIVTLICLNVIILMWTSEEKYEDYKDIHEIIN
KVFVAIFTGECIMKILALRHYFFTDGWNIFDLLVVILSLASVGVHIVLKSPSLLRIVRLV
RVSRMLRLIRQAQGIRTLLFTLLMSLPALFNIGLLLFLIMYIYAILGMAFFACANLYGDI
DNIFNFQTFGGSMLCLFQITTSAGWDKLLNPFLGTGSDFCSPNLNRQGTDNTTCVRSSVA
ITYFVSYVIISFLIVINMYTAVILEKLNVATEESTEPLCEDDFDMFYEIWGKFDSEATQF
IEYSALSDFADALEKPLRVSKPNKIQLIAMELPLFSGDRIYYXDILLAFIKRVLGESEEM
DKLMMENKLKIAIPSKPAYKPITTTLKRRQEEFSAIIIQRAFQSYMIQCSMKQGSFSCQH
RTCDSSIFEEDVSEKEGSQLDKSQTASSISFPPSYDSIAEATNDNLQVTITESSKAN
NT seq
4854 nt
NT seq
+upstream
nt +downstream
nt
atggatcatttcagtttatcatcagatgatattggtttccatcttttcacatgtgaatca
ttggccacaattgagaagcggattgctgagaaaaaaacagagcaagccaaggctaagctg
gaaaattgtgttcaacaggctaaagtagaaaaacgtcagccccgaccttatctgagagct
tgcgaaaagctgcctgctctgtttgggaatcctcctctggagctcatcggggaacccttg
gaagatcttgatccatactacaatgatcacaagacttttatggtactaaataaagagaag
acaattttccgatttactgccacacgtgccttatgtatacttagccctttccatcctatc
agaagagctgcaattaaagtttttgtccatccatatatttttgctggtatttacacttgt
gaaatattgataaaagtattagcaagtggatttgtttggaatcaattcaccttccttcgc
gatccatggaacattatggatttaattattattatggtttgattttacaggtatgtgacc
ctatgtgcccacagaagtcagtattcatattttcagattttcaggctattcatattttta
aaagctttatcaataatcccagatctaagggttgtcgtagatgcacttatccagtctatt
aagaaacttgctgaggtgattatcctgatcgttttctgcttgagtgtttttgcccttgta
ggcctccagctctttatgggtaacttgaaaatgaaatgtgtccagaactattcctgccag
aaaattggggacaatcctgattttggctacacaagctttgatcattttggctgggccttc
ctctctgttttccgtctgatgacacaagataactgggagcgtttatatcgacaaaccatc
cgaacttctggaaagacctacatgatcttttttgtggtggtcatcttcctgtgctcattt
tatctcttcaacttgattctggctgtagtaaccatggcatatgaagagcaaaacaatgcc
actcttgctaaaacacaggcaaagaagaaattgtgtcaggaagctgaggaactactaagg
aaagagcaggtctgtactctattatgtacagtacagaatacactcagcataaattactta
actttccctttgtcctccttcccacttaaactggaagagtcaaaacggaaatgtccttca
tgctggaatcgctttgcccaaaaatatctcatttggaactgttgcccactgtggatacaa
ctcaagaagaaagtgaagcttatagtaatggatccatttactgacctcactgtcactgtt
tgcattgtggtgaataccatcttcatggcactagagaaccataatacgacaccagggttt
tcgctttccctttcacaggtcttcattggaatttttacagcagaagtgatcttcaaaatc
atcgctctagatccctactactattttcagcggggctggaatatttttgacagcataatt
gttatgataagcctaataagtagaatttgggcatttaatattgactttttcagattgctg
cggatcttcaaattgtcaaggtcatggcaaggcttaaataaacttgtgaaaatcatgtgt
cagtcagttggtgccttgggtagtcttgaactggtgttgtgtatcactgtatttattttt
gctctagtaggaaggcaggtttttggacaatgttacttcaactgcgctaaaataagcaca
gactgcaaattacgctggcatatgatggatttcttccattcattccttattatattccga
attctatgtggagaatggattgaaaccttgtgggactgcatgaaagtagctgggaaagag
ctatgtcttccttttttcttgctggtcctgatggtaggaaaactagtggtgcttaaccta
ttcattgccttgctgctgaattcctggaatattgatgatccagcaacaccagatgcagct
gaaaagaggaccaagcttcagcttgccttttctcggattcacatgggtctgcagtttgtg
attcacatgacaggagatttgtgttgcaaaatactcagacaagggctgaaaacaatgacc
agcaggaaggttacggtgaaagttactacacagaacgttggtgggaatgaccatgccact
atagatatgggggaaaattacactgataatgggatttaccaaaacaaagagaaatcccca
atggcaaaggagtatgaggattttctgaccaattctaacacatttgtttgtgtccccctt
gctgaggcagagtgttacagtgaggattatgatgatgagaatagcacatatactgaaatg
gaatatacagcaatggaattggcggggatcatccaatcgactgaaaagttagatgcacct
aaggactgttttacagaaggctgtgtccaatgctccttatgctgtgcagtggatatcaca
aagtttccaggaagtacttggtggcgatttaggaaaacctgctaccaaattgttcagaat
agctggtttgaaactttcatcatattcttaattctcctgagcagtggaactctggcattt
gaagatatttaccttgagaaatatgaaacccttcaaaaacttctgatgcttgccgatata
atatttgcttacatctttttactggagatatttctgaaatgggtggcttatggtttccag
aagtatttcacgaatttctggtgtttgcttgatttctttactgtatgtgtaagtattact
tttaacctcaaccagaaagtattgacaagaacagaattatgtggcagccaacacatcaag
tctttcagaatcctgagggcattgaggcccctccgagccttatccagattggaaggaata
aaggtagttgtgtatgccctagtaggagctatcccttccatcatgaatgttatgctcatc
tgccttgttgtctggctcccatttaacatccttggagtgaaagtatttagtggaaagttt
tggaaatgcactaacctatcaagtgatttgattgatcaaattaattacagaagtgactgt
gaaatccatagtcagaggcaatcgttaaaatgggagaatgctaaagtcacctttgatcat
gttggaatggggtacttagctcttctgcaggtggcaacttttaaaggctggatggacatt
atgtatgccgcagtggattcaagtgatgtagaccagcagccaaaatttgaaaaccgtgta
tacatgtacttgtattttgtgtgttttattatgattggatcttttttcatgttgaatctc
ttcgttggaattgttatcaaaaattttaaccaacaaaggaaaaagataagcggcgatcat
ctctttttgacaaaggaacagaaaaagtattataatgccctgaagaaacttggatccaag
aaaccccaaaaacccatcccacggccattgaacaaataccaaggatttttttttgacgtt
gtatcaagcaaagcttttgagattaccattgtgactctcatctgccttaacgtgatcatt
ctgatgtggaccagtgaagagaaatatgaagactacaaggatattcatgagatcatcaac
aaggtctttgttgccatatttactggagagtgcatcatgaaaatactggctctaagacac
tacttcttcacagatggctggaatatatttgatttacttgttgtgatcctttcattagct
agtgttggagttcatattgttttaaagtctccgtcactgttgagaatcgttcgtttggtg
cgggttagccgaatgctcagactaatacggcaagcccaaggaattagaactctccttttt
acattattgatgtcccttcctgctctgttcaatattggtctcctcctttttctgatcatg
tatatttatgctattttgggcatggctttctttgcctgcgctaatttgtatggtgacatt
gataacatttttaacttccaaaccttcggtggcagcatgctctgtctcttccagatcacg
acgtcagctggctgggataagcttcttaaccctttcttagggacaggatctgacttttgc
tctccaaatttaaatagacaaggtacagacaatactacttgtgtaagaagctctgtagca
attacatattttgtaagttatgtcattatatcatttcttattgttataaacatgtataca
gctgttattttagagaaattgaatgttgctactgaggaaagtacagagcctttatgtgaa
gatgactttgatatgttttatgaaatatgggggaagtttgattctgaggcgactcagttt
attgagtattctgcactttcagactttgcagatgctttggaaaaacccttacgtgtatca
aaacccaacaaaattcagcttatagcaatggagcttcccttatttagtggagataggatc
tactactgagatattttgcttgcttttatcaaaagagtgttaggagaatctgaggagatg
gacaaactaatgatggagaataagcttaagattgccattccatcaaagcctgcttataaa
ccaatcacaactacccttaaaagaagacaagaggagttttctgccattattatccaaagg
gccttccagtcctatatgattcagtgttctatgaaacagggctctttttcatgccaacac
agaacatgtgacagtagcatctttgaagaagatgtatctgagaaggaaggtagccagtta
gataaatcacaaactgcatcttccatttctttccctccatcttatgatagcatcgctgag
gccactaatgataacttgcaggtgacaattacagagtcaagcaaggctaattaa
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