Chelonoidis abingdonii (Abingdon island giant tortoise): 116837837
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Entry
116837837 CDS
T07367
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
116837837 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116837837 (COL3A1)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116837837 (COL3A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
116837837
NCBI-ProteinID:
XP_032658479
LinkDB
All DBs
Position
10:complement(29058702..29125242)
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AA seq
1460 aa
AA seq
DB search
MSFVQKVTWLILAVFQPSITLAQQDVVGECTHLGQVYADRDVWKPEPCQICVCDSGAVLC
DDIICDDQDILDCPNPEIPFGECCPVCPRVTSTHETPTQRPNGNVVQGPKGDPGSPGIPG
LPGSPGQPGSPGSPGQPGVCQSCPSINGGSFSPQYDSYDTKAGVGPYPPPITGLGAPGPP
GLPGPAGQPGPPGAHGYQGSPGEPGQPGPSGPPGPPGLLGPAGTPGKDGESGRPGRPGER
GLPGPAGHKGPPGMPGFNGMKGHRGFDGRDGAKGDSGAPGLKGENGLPGENGSPGPMGPR
GPAGERGRPGSPGTAGARGNDGTPGASGQPGPPGPPGTAGFPGSPGAKGEAGAPGSPGSD
GTPGQRGEPGPPGHAGAAGSPGNPGRDGNPGGKGEMGPSGIPGAPGLSGARGPPGPPGIN
GIPGQRGGPGEPGKNGAKGEPGARGERGENGIPGAAGPPGEEGKKGANGEPGTNGLPGTP
GERGTLGPRGIPGSNGLPGEKGPAGERGSPGIAGPRGAPGESGRDGGPGLPGMRGLTGSP
GSPGHDGKPGPPGNQGESGRPGLPGQPGPRGQPGVMGFPGPKGNEGAPGKNGERGAPGPP
GTQGLPGKSGDVGLPGPPGIAGPPGDKGEAGPPGPSGFQGLPGTAGPPGESGKPGEPGQR
GENGAPGLPGAKGENGLPGERGPQGPQGSPGARGGTGPAGPEGGKGPAGAPGPPGGAGPP
GLQGMPGERGGNGSPGPKGDKGEPGGRGGDGIPGKDGPRGPAGPIGPPGPAGPHGDKGEP
GSAGPPGPTGVRGGPGERGEQGPPGPAGFPGAPGQNGEPGGKGERGPGGERGEPGPAGAA
GPPGGPGAPGPAGSQGPKGERGGPGSPGTAGFPGTRGLPGPPGINGNPGPPGNVGAPGKD
GGPGPAGNTGPAGSPGGVGPKGEPGQPGERGSPGSRGEVGPPGSPGPSGIVGQRGIVGPP
GLAGRPGAPGLPGPKGEDGKPGSNGSPGERGAPGLQGPSGLSGPSGESGRDGNPGSDGLP
GRDGSPGPKGDRGENGGPGLPGAPGHPGPPGNIGPAGKAGERGLPGPSGPVGPAGPAGAR
GAPGAQGARGDKGETGERGSNGIKGHRGFPGNPGSPGPPGPLGPQGANGSPGAMGARGPP
GPAGPPGKDGTSGYPGPIGPPGPRGNRGESGSAGSPGHPGPMGPPGPPGAPGPCCGGGDA
VSPLTGEKGPSYFYGDEPYENKINMNDILSSMKSINNQMENIVSPDGSRKNPARNCRDLK
FCHPELKSGDYWIDPNQGCKLDAIKAYCNMETGETCISANPSGVPRKNWWTNSGAEKKHI
WFGESMNGGFQFSYGDPELPEDVSDVQMAFLRLLSSRASQNITYHCKNSIAYVDQASGNV
KKALKLMSSIESEFKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAP
MDIGGPDQEFGVDIGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgagctttgtgcaaaaagtaacttggctcattcttgccgtgtttcaaccctcaattact
ttggcacaacaagatgttgtaggagaatgtacacatcttgggcaagtgtatgctgacagg
gatgtttggaaaccagaaccatgccaaatctgtgtgtgcgactcaggagctgttctttgt
gatgacatcatctgtgatgatcaggatatattagactgtcccaacccagagattccattt
ggagagtgttgccctgtttgtccacgggtaacatcaactcatgaaacacctactcaaagg
cctaacggtaatgttgtccaaggccccaagggagacccgggttctcctggaattcctgga
ctacctggctcccctggacaaccaggcagtcccggctctcctggccagcctggggtctgt
cagtcatgtccctctataaatggaggtagtttttctcctcagtatgactcctatgatacc
aaggctggtgttggaccgtatccacctcctattactggtttaggagcccccggcccacct
ggcctgcctggcccagctggtcaaccaggcccacccggtgctcatggataccaaggttcc
cctggtgagcctggacaacctggcccttctggacctccaggacccccaggattactaggc
ccagcaggtaccccaggaaaagatggagaatctggaagaccaggcagacctggtgagcgt
ggattacctggaccagcgggccacaaaggaccccctggtatgcctggattcaatggaatg
aaaggtcacagaggctttgatggaagagatggtgccaaaggtgatagtggtgcacctggt
ctgaagggtgaaaatggtcttcctggagaaaatggatcacctgggccaatgggtccaaga
ggtccagctggtgaaagggggagaccaggatctcctggtactgctggtgcccgtggtaac
gatggtactccaggagcgtctggacaacctggtccccctggtccccccggaactgcagga
tttccaggctctccaggtgctaagggtgaagctggtgctcctggttccccgggctctgat
ggtactcctggacaaagaggagaacctggtccacctggtcatgctggtgcagctggttct
cctggcaatcctggaagagatggaaacccaggtggtaaaggtgaaatgggcccttctggt
attcctggtgcgcctgggttgagtggagcccgagggcctcctggtcccccaggcattaat
ggaattcccggacaaagaggcgggccaggtgaacctggtaagaacggtgcaaaaggagag
ccaggtgcgcgaggagagcgtggtgaaaacggtattccaggtgctgctggtcctcctggc
gaagaaggcaaaaagggtgctaatggtgagccaggcacaaatggattacctggaacacca
ggagaaaggggtactctaggtccccgtggcatacccggtagtaatggacttccaggagaa
aagggtcctgctggcgaacgtggtagtccaggcattgccggtccaagaggagctccagga
gaatctggacgcgatggtggccctggtcttccaggaatgagaggtttgacaggaagtcca
gggagcccaggacatgatggcaaacccggccctccaggtaatcagggagaatctggccga
cctggtcttccgggccaaccaggtccacgaggtcaacctggtgtgatgggtttcccaggt
cctaagggtaatgagggtgcaccaggtaagaatggagaaagaggtgcccctggaccccct
ggcacacagggtcttcctggaaagagtggtgatgtcggcctcccaggtcctccaggaatt
gctggtcctcctggtgataaaggagaggcaggacctccaggtccatctggcttccaggga
ttacctggtactgcaggcccacctggagagagtggaaagcctggagaaccaggacaaaga
ggtgaaaatggagcccctggactcccaggtgctaagggtgaaaatggtctcccaggtgaa
cgtggtccgcaaggtcctcaaggttctcctggagcaagaggtggaacaggtcctgctggc
ccagaaggtggcaagggtcctgctggtgcacctggccctcctggtggtgcagggccacct
ggtttgcaaggaatgccaggagaaagaggaggtaacggaagtcctggacccaaaggagat
aagggagagcccggtggcagaggtggtgatggcatccctggtaaagatggaccaaggggt
cctgcaggtcccattgggcccccaggtccagctggcccacatggagataagggagaacct
ggttcagccggaccccctggtcctacaggtgtccgcggtggtcctggtgaacgaggtgaa
caaggcccccctggacctgctggcttccctggagcccctggacaaaatggggaacctggt
ggaaaaggagagagaggccctggtggtgaaagaggtgagcctggtccggcaggagctgca
ggtcctccaggaggccctggtgcaccaggtccagctggttcccaaggaccaaaaggagag
cgtggtggtccaggcagccctggtacagctggtttcccaggtactagaggcctgcctggt
ccccctggtattaatggcaatccagggccacctggtaatgttggagctcctggaaaggat
ggtggtcctggtccagcaggtaacactggtccggctggtagccctggaggtgttggtcct
aaaggtgaacctggccagccaggtgaaagaggttcaccaggttcacgaggagaagtgggt
ccaccaggtagtccaggcccctcaggtatagttggtcaacgtggtattgtggggccgcca
ggccttgctggcagaccaggtgctcctggcctacctggcccaaagggtgaagatggtaaa
ccaggcagcaatggtagcccaggagaacgtggcgctccaggtctacaaggtccttctggt
ctaagtggaccatctggagaatctggcagagatggtaaccctggatcagatggcttgcca
ggtcgtgatggatccccaggacccaagggcgatcgtggtgaaaatggtggtccaggtcta
cctggagcccctggtcatcctgggcccccagggaacattggtccagctggaaaagcgggt
gaaagaggactaccgggtccctctggtcccgttggccctgccggtcctgctggtgctcgt
ggtgctccaggtgcccaaggtgctcgtggtgacaaaggtgaaactggtgagcgtggcagc
aatggcattaagggtcatagaggatttcctggtaacccaggttcccctggtccccctggt
cctctgggtccacaaggtgccaatggaagtccaggagctatgggagcgagaggtccccct
ggcccagctggtcctcctggaaaggatggtacaagtggttacccaggccctataggtcct
ccaggccctcgtggtaaccgaggtgaaagtgggtctgcgggttcacctggccaccctggt
cccatgggccctcctggacctcctggagctcctggtccatgctgtggaggaggtgatgcc
gttagtcctttaactggtgaaaaaggaccatcatacttctacggagatgagccatatgaa
aacaagatcaatatgaacgacatcttatcttcaatgaaatcaattaacaaccaaatggaa
aacatcgttagccctgatggctcccggaagaacccagctcgtaactgcagagacctgaaa
ttctgccatccagaactcaagagcggagactactggattgatcctaaccaaggttgcaag
ttggatgctataaaagcatactgtaatatggaaactggtgaaacctgcatcagtgctaat
cccagtggcgtgccacgtaaaaactggtggaccaattcaggagctgaaaagaaacacatc
tggtttggagagtctatgaatggtggcttccagttcagctatggagatccagagcttcca
gaagatgtttcagatgtgcagatggcattccttagattgctctctagccgtgcctctcag
aatattacttatcactgcaagaacagcattgcttacgtggatcaggccagtggaaatgtt
aagaaagctctgaaactgatgagctcaattgagagtgagttcaaggctgaaggaaacagc
aaattcacatatgccgttctggaagatggctgtactaagcacactggagaatggggtaaa
acagtctttgaatacagaacgcgcaagacaatgaggttgcctgtggtggatattgctccc
atggatattggtggtcctgatcaggaatttggtgtggacattggcccagtctgtttctta
taa
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