Chelonoidis abingdonii (Abingdon island giant tortoise): 116838966
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Entry
116838966 CDS
T07367
Symbol
PTCH2
Name
(RefSeq) LOW QUALITY PROTEIN: protein patched homolog 2
KO
K11101
patched 2
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
116838966 (PTCH2)
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Motif
Pfam:
TRA2_N
Sterol-sensing
Patched
Motif
Other DBs
NCBI-GeneID:
116838966
NCBI-ProteinID:
XP_032660458
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All DBs
Position
7:complement(3346868..3402854)
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AA seq
1350 aa
AA seq
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MASEPGFGERAQSSAPPGRGAGCAQAASALKRISKGEAVGPKAPLWLRARFQALLFALGC
RIQRHCGKVLLAGLLLFGALALGLRAAAIETDLEQLWVEAGSRVSQELRYTKEKLGEESV
YTSQMLIQTPKREGENVLTQEALELHLEAALAASKVQVSLYGKSWDLNKICYKSGVPIIE
NGMIERMIEKLFPCVILTPLDCFWDGAKLQGGSAYLPGRPDIQWTNLDPVQLLEELGQFT
SLEGFRELLDKAQVGQAYVERPCLNPREPACPASAPNRPSQQDPDIPAELTGGCHGFSRK
FMHWQEELILGGTTKDPQGRLLSAEALQSMFLLMSPRQLYEHFRDDYEIQDIGWSEEKAA
AILEAWQREFVELAQESLPQNSSQRVHAFSTTTLSDIMKSFSDVSAIRVAGGYLLMLAYA
CVTMLRWDCSKSQGAVGLAGVLLVALSVASGLGLCSLLGISFNAATTQVLPFLALGIGVD
DMFLLAHAFTETSQHIPFKTLAPQQALRPVSPQAAVVVVFNFVMVLLIFPAILSLDLHRR
QDQRLDVLCCFYSPCSSRVIQIQPQEYADASENHASRPSPYGHPAVATSTQITTTVQAFA
RCDPSGRHVVTILPPTAQVCTAPLAPADPLGSQLFAPASSTRDLLAQLDGAKGGRECVPL
PLCRWNLADFAREKYAPLLLQTQTKGIVVLLFLALLGLSLYGSTLVQDGLYLTDIVPRGT
KEHAFIATQSKYFSFYHVFIATKGGFHYPSSQEALYGLHRALGALQHVVRDQARQPPRMW
LHYFQDWLQGLQAAFDKEWQAGRITRDSYRNGSEDGALAYKLLIQTGDKKEPFNYNQLTT
RRLVDENGIIPPETFYICLTVWVSNDPLGVAASHANFYPPPPEWIHDKYDATGENLRIPA
AQPLEFAQFPFYLSGLRQTADFVEAIESVRAVCEEAARERGVASYPSGYPFLFWEQYIGL
RHWFLLAVSIVLACTFLVCAVLLLNPWTAGIIVAVLAMMTVELFGIMGLMGIKLSAIPAV
ILIASVGIGVEFTVHVALVSRVGAPGRRKLLALEHRAAPRAASSTLLGLLMLXGSEFDFI
LRYFFAVLTVLTVLGLLNGLVLLPVLLSVIGPPAEVIPADNGSRLPSPEPIPPPISHHGF
YVRPPQAWPGAFADSLDSQYYLESTAGSGLTHPQPYDPGTYILPPTPARVLVQASKNPSF
PTITVVKTYQENQEPMGKKEPLSTSQPQSLPASDSLPSAGPDLRDLPQHRLPRPGPPGAR
TAPHGAPRPLRTALPIYSGSYTTVTAMASVTLALHTPLPGSLQGYTHDSYEDSKSDCPEP
SPPACCTPGSTAPKTLTLHHLGRADGSARP
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggagcccggctttggagagcgcgcccagagctcagctccgcccggccgggga
gccggctgcgcccaagccgcctcggcgctgaagcggatctccaagggcgaggccgtcggc
cccaaggccccgctgtggctgcgggcccggttccaggcgctgctcttcgcgctgggctgc
cgcatccagcggcactgcgggaaggtgctgctcgccgggctgctgctcttcggcgcgctg
gccctggggctccgggccgccgccatcgagaccgacctggagcagctgtgggtggaagct
ggcagccgtgtcagccaggagctcaggtacacgaaagagaagctgggggaagaatccgtc
tacacgtcccaaatgctgatccagaccccaaaacgggaaggggagaacgtcctcacccag
gaggcgctggagctgcacctcgaggcggcactggcagccagcaaggtgcaagtctcgctg
tatggaaaatcctgggatttgaacaaaatctgctacaaatccggtgtcccgatcattgag
aatggcatgatcgagcggatgatcgagaagcttttcccctgtgtgatcctgacccctctg
gactgcttttgggacggcgccaagctgcagggaggctccgcctacctcccggggcggccg
gacatccagtggacgaacctggaccccgtgcaactgctggaggagctgggccagttcacc
tcgctggagggcttccgggagctgctggacaaggcgcaggtgggacaggcctacgtggag
cggccctgcctcaacccccgcgagcccgcgtgccctgccagcgcccccaacaggccgagc
cagcaggaccccgacatccctgccgagctgacggggggctgccacggcttctcccggaaa
ttcatgcactggcaagaggagctgatcctgggtggcaccacgaaggacccacagggcagg
ctgctgagcgctgaggccctgcagagcatgttcctgcttatgagcccgcggcagctctac
gagcacttcagggatgactacgagatccaggacattggctggagtgaggagaaggcggct
gccatcctggaggcctggcagagggagtttgttgagctggctcaggagtccctcccgcag
aacagctcccagcgtgtccacgccttctccaccaccacgctcagcgatatcatgaagtcc
ttctcggacgtgagcgccatccgtgtggccgggggctaccttctgatgctggcatatgcc
tgcgtgaccatgctgcgctgggactgctccaaatctcagggggccgtgggcttggccggt
gtcctgctggtggccctctccgtggcgtcaggactcgggctctgctcgctgctgggaatc
tccttcaatgcagccaccacccaggtgctgccgttcctggccctgggcatcggggtggac
gatatgttcctcctggctcacgccttcaccgagaccagccagcacatcccctttaagacc
ctggctccccagcaggctctgcgccccgtgtccccgcaggctgccgtggtggtggtgttt
aacttcgtcatggtgctgctcatcttcccggccatcctcagcctggatctgcaccgacgc
caggaccagcggcttgacgtcttgtgctgcttttacagcccgtgctcctcccgtgtcatc
cagatccagccgcaggagtacgccgacgccagcgagaaccacgcctctcgcccctcgcca
tacgggcacccggctgtggccaccagcacccagatcaccaccacagtgcaggccttcgcc
cgctgcgacccctcaggccggcacgttgtcaccatcctgccgcccaccgcccaggtctgc
actgcgccactggctcccgccgacccgctgggctcccagctgttcgccccggccagctcc
acccgcgacctgctggcccagctggacggggccaaggggggccgggagtgcgtgccgctg
cccctgtgccgctggaatctggctgacttcgccagggagaagtacgcccccctcctgctg
cagactcagaccaagggtatcgtggtgctgctgttcctggcgctgctgggcctcagtctg
tatggcagcacactggtgcaagacgggctgtacctgacggacatcgtgccgcggggcacc
aaggagcacgccttcatcgccacccagtccaagtacttctccttctaccacgtcttcatc
gccaccaagggcggcttccactaccccagctcccaggaggcgctgtacggcctgcaccgg
gccctgggcgccctgcagcacgtggtgcgcgaccaggcccgccagccgccccggatgtgg
ctgcactacttccaggactggctgcaaggcctgcaggccgcctttgacaaggagtggcag
gccgggcgcatcacccgtgacagctaccggaacggctccgaggacggcgcgctggcctac
aagctgctcatccagacgggtgacaagaaggagccgttcaactacaatcagctcaccaca
cgccgcctggtcgacgagaacggcatcatccccccagagaccttctacatctgcctgact
gtgtgggtgagcaatgacccgctgggcgtcgccgcctcccatgccaacttctaccccccg
ccgcccgagtggatccacgacaagtacgatgccactggcgagaacctgcgaatccccgca
gcccagcccctggagttcgcccagttccccttctacctgagcggcctgcgccagactgcg
gacttcgtggaagccatcgagagcgtgcgggctgtgtgcgaggaggcggcccgggagcgc
ggcgtggccagctaccccagcggctaccccttcctcttctgggagcagtacatcggcctg
cgccactggttcctgctggctgtcagcattgtgctggcctgcaccttcctggtgtgcgcc
gtgctgctgctcaacccctggaccgctggcatcatcgtggccgtgctggccatgatgacg
gtcgagctctttgggatcatggggctgatgggcatcaagctaagcgccatcccagccgtg
atcctcatcgcctcggtgggcattggcgtcgagttcaccgtccacgtggccctggtgagt
cgggtgggggcgcctgggagacggaaattgctagcattggagcaccgggccgccccccgg
gccgcctcatccacactgctgggtctactcatgcgcggctccgagttcgacttcatcctg
aggtatttctttgccgtgctcactgtcctgactgtcttgggcctcctgaacggcctggtg
ctgctgcccgtcctgctgtcagtcatcgggcccccggccgaggtcatcccagccgataat
ggcagccgcctgccgtcaccagagcccatccccccacccatcagccatcacggcttctac
gtgcggccgccccaggcctggcccggtgccttcgcggactccctggactcgcagtactac
ttggagagcactgcgggctcggggctgacccacccccagccctacgaccccggcacctac
atcctgccgcccaccccggcccgggtcctggtgcaggccagcaagaatcccagcttcccc
accatcacggtggtgaaaacctaccaggagaaccaggagccgatggggaagaaagagcca
ctgagcaccagccagccccagtctctgcctgccagcgactccctcccatcggccggccca
gatctcagggacttgcctcagcacagactgccccggcccggccccccgggtgccaggact
gccccgcacggagcaccccggcccctgcggactgccctccccatctacagcggcagctac
accacggtgacagccatggcttctgtgacgctggccctgcacacccccctgccgggctct
ctgcagggttacacccatgacagctacgaggacagcaagtcggactgcccggagcccagc
ccgcccgcctgctgcacccccggctccaccgcacccaagaccctcacactccaccacctg
ggacgggcagacggctccgcgaggccctag
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