Chelonoidis abingdonii (Abingdon island giant tortoise): 116839741
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Entry
116839741 CDS
T07367
Symbol
EXOSC8
Name
(RefSeq) exosome complex component RRP43 isoform X1
KO
K12586
exosome complex component RRP43
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
116839741 (EXOSC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabi03019
]
116839741 (EXOSC8)
Messenger RNA biogenesis [BR:
cabi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
116839741 (EXOSC8)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
CdsD_PD1
Motif
Other DBs
NCBI-GeneID:
116839741
NCBI-ProteinID:
XP_032661806
Ensembl:
ENSCABG00000015696
LinkDB
All DBs
Position
Unknown
AA seq
360 aa
AA seq
DB search
MAAGFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNVGSITTADGSALVKLGNTTVIC
GIKAEFAEPPAESNNKGYIVPNVDLPPLCSSRFRPGPPGEEAQAASQFIADVIENSEIIM
KEDLCIAHGKLAWVLYCDFICLDYDGNILDACTFALLAALKNVQLPKVTINEETGLAEVD
LKQTNPLNIRKHPVATSFAVFDDTILIVDPTAEEEELATGTVTIVMDEEGRLCSVHKPVL
LGNMTNLLLLLAHVDSWCGKDIRCSESVIWVYVKKHQSTKMSKDIFSFPDFSHYPNHAFS
QDVALNKYFLFVIRVHFLLKNVFYYIQIRHFQFRIIHVVSMDSKSKLLYRKIRGLHFLHP
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggcggccggattcaaaactgtggaacctttggaatattacaggcgatttttgaaagag
aactgccgacctgatggaagggagctaggtgaattcagaacaaccactgtcaacgtaggt
tcaattactactgcagatggctctgccctggtgaagttgggaaatactactgtaatttgt
ggcattaaagcggagtttgcagaacccccagcagagtccaataataagggatatatcgtt
cctaatgtggatctgccacccctctgttcatcaagatttcggcccggacctcctggggaa
gaggctcaagcagctagccagttcattgcagatgtgattgaaaattcagaaataataatg
aaagaagatctgtgcattgcacatggcaagcttgcttgggttctatactgcgatttcata
tgcttggactatgacggaaacattttggatgcctgcacatttgctttgctagcagcttta
aagaatgtacagttgccaaaagttactataaatgaagaaacaggtttggcagaagttgat
ttaaaacagacaaatcctttgaatatcagaaagcatccagtcgctacatcgtttgctgta
tttgatgacacaatactcattgttgatccgacggcagaagaggaggagctggcaactgga
actgtaaccattgtaatggatgaagaaggcagactatgttctgttcataagccagttctc
ctgggaaatatgaccaatctattgcttcttttggctcatgtagattcatggtgcggaaag
gatatcagatgcagtgagagtgtgatttgggtgtatgtcaagaaacaccaaagcactaaa
atgtcaaaggatatatttagttttcctgatttctctcattatcccaatcacgctttctca
caagatgtagctctaaataaatatttcttgtttgttattcgtgttcactttttactgaaa
aatgtattttattacattcagattagacattttcaattcagaattattcatgttgtttcc
atggattcaaaaagcaaactactttacaggaaaataaggggactacattttttacatccc
tga
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