Chelonoidis abingdonii (Abingdon island giant tortoise): 116839813
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Entry
116839813 CDS
T07367
Symbol
TNXB
Name
(RefSeq) LOW QUALITY PROTEIN: tenascin-X
KO
K06252
tenascin
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Pathway
cabi04510
Focal adhesion
cabi04512
ECM-receptor interaction
cabi04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116839813 (TNXB)
04518 Integrin signaling
116839813 (TNXB)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
116839813 (TNXB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cabi00536
]
116839813 (TNXB)
Glycosaminoglycan binding proteins [BR:
cabi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116839813 (TNXB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_Dep-1_3rd
Fn3_Dep-1_2nd
Motif
Other DBs
NCBI-GeneID:
116839813
NCBI-ProteinID:
XP_074927592
LinkDB
All DBs
Position
12:1060100..1122574
Genome browser
AA seq
2257 aa
AA seq
DB search
MAQNLTAKLAQYNGTLLQRLESYLRATRYPLRGNQTIASVAWTIYLYLVNRKSLEEQEMV
YVGLGQHSKELGAMAPTLGHPAEEPTGPPGRFQIAGKEGGIFSEGSPGWATGPRGHAKPA
VVTRSPGAIVVSLEGMRGHAERMVVRYWRAGDGGGAGELAVPGDAAVVRLHGLAPGTTYQ
VEIHGLVQGQLSKSYSFVASTAPEASGTEPPPTPSLPRPGPPPGDLAVTDVSPDRFRVTW
TATPGTFQHFLLQYREPGSQVPPGQTQVPGGKRSVIVTQLSPGTEYEVELRGVAPDGTIS
EPITTSVSTEPRHPDRVTPLSLAKPLGGGPGPSDLGALGVRNVTSDGFGLQWRARKGLFQ
SFLLRYEDAAGRMGPREAEVLADQRATRVGGLRPGTEYNVTLYGVHRGQLSPPLRARVRT
APAEPGTQPSLGELSASDVTHDSALLSWTVQAGDFDSFLLQYKDAEGKPQALPVDGGSST
VTVTNLAPSRRYKFNLYGISGRKRLGPVSTDTVTATAPTEAVPTAQPSLGELSASDITHN
SILLSWTVQAGDFDSFLLQYKDAEGKPQALPVDGGSRVVTVTNLAPSRRYKFNLYGISGH
KRLGPISTDTITAAVQREEEITAEPSLGELSASDITHDSILLSWTVQAGDFDSFLLQYKD
AEGKPQALPVDGGSRTVTVTNLAPSHRYNFKFYGVSGRKRLGPISTNAVTAPWKDEPTAQ
PSLGELSASNVTRDSILLSWTVQAGDFDSFLLQYKDKEGKPQALPMEGGSRTVTITNLAP
SRRYKFNLYGVSGRKRLGPISTDTVTGAVAQGEEEPSLGELSASDVTHNSILLSWTIQAG
DFDSFLLQYKDAEGKPQALPVDGGSRTVTVTNLAPSRRYKFNLYGISGRKRLGPISTDTV
TAVAPREEAVGMQLRLGELSAANAGHDSIDLSWTVEEGTFDSFILQYRDAEGQPSGHWPV
VVPMPAPSPSMTCAPSARYKFTSRSGTRRRRLGFPAQPGEELSASNLTHDLPICSSLDLS
SAWGLRLPSSSETRYKFNLYGIYGPQAPRAHLPRRHHRSTAAPGYKINLYGHLRRKRLGP
ISPTPHSRGPRSGAHLPTAAWGLSAFDITMTPPPLCLDCPDRGPSLLPPPVQDSEADPGM
PQFPQRARPTLLRQCPPACMGIRTVTVTNLGPLSRRYKFTFYGISGRKRLGPVSTDTVTA
PWKEKPAPQPSLGELSASDVTHDSIRLSWTIHAGDFNSFLLQYKDAEGKTQALPVEGGSR
TVTVTNLAPSRRYKFNLYGIYGRKRLGPISTDAITAAAPTEEVPTAQPSLGELSASDVTH
DSILLSWTVQAGDFDSFLLQYKDAEGKPQGKPQALPVDGGSRTVTVTNLAPSRRYKFNLY
GISGRKRLGPISTDSVTAVAPWDKGAGTQLRLGELSASNVTRDSALLSWTVEEGTFDSFI
LQYKDAEGKPQVLPVDGGSRTVTVTNLAPSRRYKFNLYGISGRKRLGPVSTDTITAQLPE
AGAVCPRGGVAREAGNVGCSLQPFAVVMSRPRFSFSRRIVTVLGPSVPGAPPRSPAGELR
DSFLLQYKDAEGKPQALPVDGGSRTVTITNLAPSRRYKFNLYGISGRKRLGPISTDTVTA
PQEEGAGMQLRLGPLSASDITHDSLNLSWTVEEGTFDSFILQYRDADGKPQVLPVDGGSR
TVTVTSLAPSRRYKFNLYGISGRKRLGPVSTDTVTGRPDEEQEEEEEEGATQPKLGELST
SEVTKDSVRLSWTVQAGAFDSFLLQYRDAEGKPQALPVDGGSRTLVVSDLLPSRKYKFNL
YGISGHKRLGPISTDAVTAFPEASSVTPARLEQLLVSEVTPTSLRLRWDAPEGDFDTFLI
RYRAEGRGPAQEVPVPGAQRSAVLRGLRPGTEYDLAVYGLRQGKETANVHGAARTSSLAG
RGPRTCAFASPRDLAGVTGGPPSTHVDHYKVFLQLAPMGESRRPRWSEGTRLQTTLGALI
PGASYEVSIMAMRASRKSAPLVGYVTTIPDGPSDLRAVNIADTSALLRWRPPRAPVQSYK
LSYGPPQGERGGREIPGPDAASHQLSNLTRSAATKVPGAGDPVAAQHPHPTSFNTGVTSQ
HLTKISPEHPHHLVNDALRTRLSGEGVSKEAACGLVGPSAPEAVFASNQRFRVDPAQRGN
FNFRAVSVCDPWAATAGTRGEENSEVDRTELTTRAASSRPGTGPEPPVDTLRHVSYQRGL
VVPATRHYAPTSTGFRLGSRRTPRYAHRTPGFSPRHW
NT seq
6774 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaacctgacggccaagctggcccagtacaacgggaccctgctgcagcgcctg
gagagttacctccgtgccacacgctacccgctccgcggcaaccaaaccatcgccagcgtg
gcctggaccatctacctctacctggtgaacaggaagtccctggaggaacaggagatggtc
tacgtggggctgggccagcattcgaaggagctcggggccatggcacccaccttggggcac
cctgcggaggaacccacggggccccccggccgcttccagatagccgggaaggagggcggc
atcttctcggagggctcccccggctgggccacggggcccaggggccacgccaagccggcg
gtggtgacccgctcccccggcgccattgtggtctcactggagggcatgcgtggccacgcg
gagcgcatggtggtccgctactggcgggcgggcgacggcggaggagcgggggagctggcg
gttcccggcgacgccgcagtggttcgcctgcatggcctggcgcctggcaccacctaccag
gtggagatccatggccttgtccaggggcagctctccaagtcctattcctttgtcgcctcc
acagctccagaggcatctggcaccgagcccccccccacgcccagcctcccccgccctggg
ccacccccaggggacctggccgtgacagacgtctcccccgaccggttccgcgtcacctgg
acagccacgcctggcaccttccagcacttcctgctgcagtaccgagagcccggctcccag
gtgccccccgggcagacccaggtgcctggagggaagaggagtgtgatcgtcacccagctg
agccccggcaccgaatacgaggtggagctgcggggggtggcacctgacgggaccatctca
gagcccatcaccaccagcgtgtcgacagagcccaggcaccctgaccgcgttacccctctc
tctcttgcaaaaccccttggtgggggccccgggccaagcgacttgggggccctgggggtc
aggaacgtgaccagcgatgggtttgggctgcagtggagagcgcggaagggcctgttccag
tccttcctgctgcgctacgaagatgcggccgggcgcatggggccccgggaggccgaggtg
ctggcggaccagcgggcgacccgtgttggggggctgcggccaggcaccgagtacaacgtc
acgctgtacggggtgcaccgcggccagctctcacccccactcagagccagagtccggaca
gcaccagcagaacccggcacccagcccagcctgggggagctctcggcctccgacgtcacc
cacgactccgccctgctctcctggaccgtccaggccggggacttcgactccttcctcctc
cagtacaaggacgcggagggaaaaccccaggcgctgcccgtggacgggggatccagcacg
gtcaccgtcaccaacctggccccctcccgcagatacaagttcaacctctacggcatctcc
ggccgcaagcgcctcggccccgtctccaccgacaccgtcacagccacggcaccgacggag
gcagtacccaccgcccagcccagcctgggggagctctcggcctctgacataacccacaac
tccatcctgctatcctggaccgtccaggctggggacttcgactccttcctcctgcagtac
aaggacgcggagggaaaaccccaggcgctgcccgtggatgggggatcccgcgtggtcacc
gtaaccaacctggccccctcccgcagatacaagttcaacctctacggcatctccggccac
aagcgcctcgggcccatctccaccgacaccatcacagctgcagtgcagcgggaggaagaa
atcaccgccgagcccagcctgggggagctctcggcctccgacataacccacgactccatc
ctgctctcctggaccgtccaggccggggacttcgactccttcctcctccagtacaaggac
gcggagggcaaaccccaggcgctgcccgtggacgggggatcccgcacggtcaccgtcacc
aacctggccccctcccacagatacaacttcaaattctatggtgtctccggccgcaagcgc
ctcggacctatctccactaatgcagtcacagcgccatggaaggatgaacccaccgcccag
cccagcctgggggagctctcagcctccaacgtcacccgcgactccatcctgctctcctgg
actgtccaggccggggacttcgattccttcctcctgcagtacaaggacaaggagggcaaa
ccccaggcgctgcccatggaggggggatcccgcacggtcaccatcaccaacctggccccc
tcccgcagatacaagttcaacctctacggcgtctccggccgcaagcgcctcggccccatc
tccaccgacaccgttacaggcgcggtggcgcagggggaggaggagcccagcctaggggag
ctctcggcctctgacgtcacccacaactccatcctgctctcctggaccatccaggccggg
gacttcgactccttcctcctgcagtacaaggacgcggagggcaaaccccaggcgctgccc
gtggatgggggatcccgcacggtcacagtcaccaacctggccccctcccgcagatacaag
ttcaacctctacggcatctcaggccgcaagcgcctcgggcccatctccaccgacaccgtc
acagccgtggcaccgcgggaggaggcagttgggatgcagctccgcctgggggagctctca
gcggccaacgcaggccacgactccatcgacctctcctggactgtggaggaggggacattc
gactccttcatcctccagtaccgggacgcagaggggcaaccctccgggcactggcccgtg
gtggtgcccatgcctgctccctcaccgtccatgacctgcgccccctccgccagatacaag
ttcacctcccgctctggcacccgacggaggcgcctcgggttcccagcccagcctggtgag
gagctctcagcctccaacctcacccacgacctacccatctgctcctccctggacctgtcc
agtgcctggggacttcgacttccttcctcctccgagacaagatacaagttcaacctctac
ggcatctacgggccgcaagcgcctcgggcccatctcccacgacgccatcacaggtcaacg
gctgctcccggatacaagatcaacctctacgggcatctacgccgcaagcgcctcggcccc
atctcaccgacaccgcacagccgtggcccacgaagcggtgcccacctgcccaccgcagcc
tgggggctctctgccttcgacatcacaatgactccacctccgctctgtctggactgtcca
gaccggggaccttcactccttcctcctccagtacaagactcagaggccgaccctggcatg
ccccagttcccccaacgtgcccgcccgacccttctgaggcagtgcccccccgcgtgtatg
gggatccgcacggtcactgtcaccaacctgggccccctctcccgcagatacaagttcacc
ttctacggcatctctggccgcaagcgcctcgggcccgtctccaccgacaccgtcacagcg
ccatggaaggagaaacccgccccccagcccagcctaggggagctctcggcctctgacgtc
acccacgactccatccggctctcctggaccatccacgccggggacttcaactccttcctc
ctccagtacaaggacgcggagggcaaaacccaggcactgcccgtggaggggggatcccgc
acggtcaccgtcaccaacctggccccctcccgcagatacaagttcaacctctacggcatc
tacggccgcaagcgcctcgggcccatctccactgacgccatcacagccgcggcacccaca
gaagaggtgcccaccgcccagcccagcctgggggagctctcggcctctgacgtcacccac
gactccatcctgctttcctggaccgtccaggccggcgacttcgactccttcctcctccag
tacaaggacgcggagggcaaaccccagggcaaaccccaggcgctgcctgtggacggggga
tcccgcacggtcaccgtcaccaacctggccccctcccgcagatacaagttcaacctctac
ggcatctccggccgcaagcgcctcggccccatctccaccgacagcgtcacagctgtggca
ccgtgggacaagggagccgggacgcagctacgcctcggggagctctcagcctccaatgtc
acccgcgactctgccttgctctcctggaccgtggaggaggggaccttcgactccttcatc
ctccagtacaaggatgcggagggcaaaccccaggtgctgcccgtggacgggggatcccgc
acggtcaccgtcaccaacctggccccctcccgcagatacaagttcaacctctacggcatc
tctggccgcaagcgcctcggccccgtctccactgacaccatcacagctcagcttcccgag
gctggtgcggtttgcccgcggggcggggtggcgcgggaagccgggaatgtgggctgctct
ttgcagccttttgccgtcgtcatgtctcggccccgcttctccttcagccgcaggatcgtc
actgtcctggggccgtcggtccctggggctccccctcggtccccagctggggagcttcga
gactccttcctcctccagtacaaggacgcggagggcaaaccccaggcgctgcctgtggac
gggggatcccgcacggtcaccatcaccaacctggccccctcccgcagatacaagttcaac
ctctacggcatctccggccgcaagcgcctcgggcccatctccaccgacaccgtcacagcg
ccacaggaggagggagccgggatgcagctccgcctggggccgctctcggcctctgacatc
acccacgactccctcaatctgtcctggaccgtggaggaagggaccttcgactccttcatc
ctccagtaccgggacgcggatggcaaaccccaggtgctgcccgtggacgggggatcccgc
acggtcaccgtcaccagcctggccccctcccgcagatacaagttcaacctctacggcatc
tctggccgcaagcgcctcggccccgtctccaccgacaccgtcacaggccggccggacgag
gagcaggaggaggaggaggaggaaggggccacgcagcccaagctgggggagctctcgacc
tctgaggtcaccaaagactccgtccgcctctcctggactgtccaggccggggccttcgac
tccttcctcctgcagtaccgggacgcggagggcaaaccccaggcgctgcccgtggacggg
ggatcccgcacgctcgtcgtctccgacctgctcccctcccgcaagtacaagttcaacctc
tacggcatctccggccacaagcgcctcggccccatctccaccgacgccgtcacagccttc
ccggaagcctccagcgtgacacccgcccggctggagcagctgctcgtctccgaggtgacc
ccgacctccctgcggctgcgctgggacgcgcccgagggcgactttgacaccttcctcatc
cgttaccgggccgagggccgggggcccgcccaggaggtgccagtgccgggggcccagcgc
tcggctgtgctgcgggggctgcggcccggcaccgaatacgacctggccgtgtacggcctg
cggcagggcaaggagacggccaacgtccacggggccgcgcggaccagcagcctcgctggg
agaggccccaggacctgcgctttcgcgagtccgcgagacctcgctggggtgacgggcggg
cccccgtccacccacgtcgaccactacaaggtcttccttcagcttgcgcccatgggggag
agccgcaggccacgatggtcagagggcaccaggctgcagacgacgctcggggcgctgatc
cccggggccagctacgaagtcagcatcatggccatgcgggcttcgaggaagagcgcgccg
ctggtgggctacgtcaccacaatccccgatggcccctccgacctgcgagccgtcaacatc
gccgacacctcggccctgctgcgctggcgcccgccccgggcccccgtccagagctacaag
ctgagctacgggcccccccagggtgagcgcgggggcagggagatccctgggcccgacgcc
gcctcccaccagctgagcaacctgacccgttcagccgctaccaaggttccgggtgcaggc
gatccggtggccgcccagcacccccatcccacctccttcaacaccggcgtcaccagccag
cacctgaccaaaatatcgccagaacacccgcaccacctggttaacgacgccctgcgaacg
aggctgagcggcgagggagtgagcaaggaagctgcgtgtggtctcgtcgggccctcggcg
ccggaggccgtgttcgccagtaaccagcgcttccgagtggaccccgcccagcgaggcaat
ttcaatttccgggctgtgtctgtgtgtgatccgtgggcagctaccgccggcacgcgcggt
gaggagaacagtgaggtcgaccgcactgagctaaccactcgggcagcgtcttctcgacca
gggaccggacccgaaccgcctgttgataccctgcgccacgtgtcctaccagcggggcctg
gtggtacctgcaactcgccactacgcgccaacctcaacgggcttccgactcggcagccgc
cggacacccaggtacgcgcaccggacgcctgggttctcgccccggcactggtag
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integrated database retrieval system
