Chelonoidis abingdonii (Abingdon island giant tortoise): 116839852
Help
Entry
116839852 CDS
T07367
Symbol
RC3H1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
cabi
Chelonoidis abingdonii (Abingdon island giant tortoise)
Brite
KEGG Orthology (KO) [BR:
cabi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cabi03000
]
116839852 (RC3H1)
04121 Ubiquitin system [BR:
cabi04121
]
116839852 (RC3H1)
Transcription factors [BR:
cabi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
116839852 (RC3H1)
Ubiquitin system [BR:
cabi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116839852 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
116839852
NCBI-ProteinID:
XP_032661970
Ensembl:
ENSCABG00000018372
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IDLLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAAILSDE
GAVDLPSRKSSALSNGIVSTVSTGTQLISRGTDSGFDSALKPGKIDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPPRGPTDLLTTSKQLQIVPRGSQLYPAQQGNVFYQEPRGSAA
PFEPSPYPQGVYYPTPSSQCMSRFVRPPPSAPEPGGPYLDHYPPYLQDRLVNSQYSTQPQ
QYPPMGQPMYPHYESRRVYPSAQPYQREEIVRGSPVPIDIPRGAAPPYVPESRDRYQQVE
GYYPVGPHLNPIRPYHRETYNPLPPPSQTHPSLDELHRRRKEIMAQLEERKVISPPPFAP
SPTLTHPFHPEEYSDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSV
EMANIDSKGMRDQRLDLQRRAAEAGDDDLIPFGDRPTVSRFGAISRTSKTMYQSSGPMQA
MAVQGASTKSINISDYSPYGTHGGWGASAYSPHQNIPSQGRFSDSPFPAPRRERLSMSDV
ASHGKPLPSAEREQQLRLELQQLNHQISQQTQLRGLEAVNNRLLLQREATTLAGQPQPPP
HKWPAMISSEQLSMELHQVEREIGKRTRELSMETQSSLDMKSNLGTNKQTENGQLEPQSK
VPAEDLTLTFSDVPNGSVLTQENISPLSNKTTSLNLSEDPEGGGDHQDSQRTGVAPASSP
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccaatttgcacacaaact
tttgacgaaacgatccggaagcccatcagcttgggctgcggccacactgtctgcaagatg
tgcctcaacaagctccaccgtaaggcatgccccttcgaccagaccactatcaatacagat
attgatctcctccctgtgaactcagccttgttgcagctagtgggggctcaggttcctgag
cagcagccaattactttgtgcagtggagcagaagataccaaacattatgaggaggccaag
aaatgtgtggaagaactagcattgtacctcaaaccactcagcagtgcgagaggtgtgggt
ctgaacagtaccactcagagtgtgctaagtcgccccatgcagaggaagcttgtaactcta
gttcactgccagctagtagaggaagaaggacgaatcagggccatgcgtgcagcacggtca
ctgggtgaaagaacagtcacagagctcattcttcaacatcaaaatccccagcaactctct
tccaacctttgggctgcagtgagggccaggggctgccagttcctggggccagcaatgcaa
gaggaagcactgaagctggttctgctggctctggaagatggatctgctttgtcacgaaag
gtcttggttctctttgtggtgcagagattggagccacgatttcctcaagcttctaaaacc
agcattgggcatgttgtccagcttctttacagagcctcctgcttcaaggtgactaaacgt
gatgaggactcctccctgatgcagttgaaggaggagttccgtacctatgaagctctgcga
agggaacatgattcccagattgtgcagattgccatggaagcaggtttacgcattgcaccg
gatcagtggtcctcgctgctgtatggtgatcagtcccacaaatcccacatgcaatccatc
attgacaagttgcagaccccagcctcatttgcacagagtgttcaagaactaaccattgct
ctccagaggactggagacccagccaacctgaaccggcttcgacctcacctagagctcttg
gcaaatattgaccctagtccagatgccccacccccaacatgggaacaactagaaaatgga
ttagttgctgtgaggacagtggtacatggactagttgattatatccagaatcacagcaag
aaaggaacagatcagcagcagcctcctcagcacagcaagtataagacatacatgtgccga
gacatgaagcagagaggagggtgtcctcgtggagccagctgcacctttgcacactcacag
gaggaattagaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctccttgggccagctaaatgaggtgggcctgccttcagcagctatcctctcggatgaa
ggggcagtggacttgcccagtagaaaatcctctgccttgtcgaatgggattgtgtctacg
gtcagcacagggacgcagcttatctcccgagggaccgactccggctttgattctgctctg
aagccagggaagatcgaccaccttagcagcagtgcccctggatcccctcctgacttgctg
gagtctgtccccaagagctctatttctgccttaccagtgaacccccaccctgtgcccccg
agaggacctacagacctgctcacaacgtccaagcaactccaaattgtaccacgagggtca
cagttgtatcctgctcaacaaggaaatgtgttttatcaggaacctagaggatctgctgca
ccgtttgagccatcaccttatccacaaggtgtgtactatcctactccatcctcacagtgc
atgtctcgttttgtccgacctccaccatctgctcctgaacctggtggtccttacttagac
cattacccaccctaccttcaggatcgtctggtgaattcgcagtacagcacacagccacag
cagtatcctcccatgggacaacctatgtacccacattatgagagccggcgtgtgtacccc
tctgcccaaccataccagcgagaagagattgtccgaggaagccccgtgcccattgacatt
ccacgtggagctgcacctccctacgtacctgaatccagagacagataccagcaagtggag
ggttattatcccgtgggtccacatctcaatccgatcagaccataccacagagagacttat
aacccacttccgcctccatctcaaacccatcccagcctggatgagcttcatcgccgaagg
aaggaaatcatggcccagttagaagaaaggaaggtgatctccccacctccttttgcaccg
tcacccactttgactcacccgttccacccagaggagtactcggatgaagacctgaaagta
gctgggaaatacaaaggaaatgattatagccagtactctccttggtcgtgtgacaccatt
ggctcctacattggaaccaaagatgcaaaacccaaagatgttgtggcagcagggagtgta
gagatggcgaacatagatagtaaaggcatgcgtgaccagcggttggacttacagagaagg
gcagcagaagctggggatgatgacctcatcccatttggagaccggccaactgtgtcaagg
tttggggccatctcgcgtacttccaaaacaatgtaccagagttctggccccatgcaggcc
atggcggtacagggagcttccaccaaatctatcaacatttcagattacagtccatatgga
actcatggcggctggggagcttctgcatattcaccccaccaaaacataccttctcaggga
cgtttcagtgacagtccctttcctgcccctcgaagggagagattgtccatgtcagatgtg
gccagtcacgggaaacccttgccgtcagctgagagggagcagcagctcaggctggaactg
cagcaactaaatcatcagatcagccagcagacacaattacgaggactggaggctgttaat
aacaggctgctgttgcagagggaggcgaccaccctggcaggccagccacagccaccacct
cataaatggcctgcaatgatctcaagtgaacagctgagtatggaactgcaccaggtggaa
agggaaatcgggaagagaacccgtgagctgagcatggagacccaatcttcactggacatg
aaaagcaacttgggcaccaataaacagacagaaaatggacaactggaaccacaaagcaag
gttccagctgaggacctcacactgacgttcagtgatgttccaaatggatcagtcttgacg
caagagaacatcagccccctgtcaaacaagaccacatctctgaacctgtcagaggaccca
gaggggggaggagaccaccaggactcccagagaacaggagttgcacccgcctcttctcca
tga
DBGET
integrated database retrieval system
