Caballeronia sp. NK8: NK8_08930
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Entry
NK8_08930 CDS
T09553
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NK8_08930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabk03019
]
NK8_08930
Enzymes [BR:
cabk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NK8_08930
Messenger RNA biogenesis [BR:
cabk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NK8_08930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
HEM4
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BCQ22775
LinkDB
All DBs
Position
1:951116..952603
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AA seq
495 aa
AA seq
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MSDSVAMNTSTAQAAAPTFDQFGLSADILKAVSESGYTIPTPIQAQAIPVVLAGRDVMGA
AQTGTGKTASFSLPIIQRLLPSANTSASPARHPVRALMLTPTRELADQVAANVQTYSKHT
PLRSTVVFGGVDMNPQSDALRRGVEILIATPGRLLDHVQQKTVNLGQVQMLVLDEADRML
DMGFLPDLQRILNLLPKERQTLLFSATFSPEIKKLAATYLRDPQTIEVARSNSTATNVRQ
IVFEVHESDKSGAVAQLIRERQLKQVIVFCNSKIGASRLARVLERDGIIATAIHGDRSQS
ERMQALDAFKRGEVEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGAS
GDALSLCSANERKQLADIEKLIKRPLEVEQLVVATRVHRDGSAPLRRDERFGRPERGEHR
HAPREEAGSRRRATGSHDRPRGRQQPVDEFFLKPYEPSPSAMKRHEETVEPERKSGPKQP
LAALLGGLGMPRKSS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgtctgattccgtcgccatgaacacgtccaccgcacaggccgccgcgccgacgttcgac
cagttcggattgtccgccgacatcctgaaagcggtgagcgagtccggctacaccataccc
acgccgatccaggcgcaggcgatcccggtcgtcctcgcgggccgcgatgtcatgggcgcc
gcgcagaccggcaccggcaagaccgcgagtttctcgctgccgatcatccagcgcctgctg
ccgtcggcgaacacgagcgcgtcgccggcgcgccatccggtgcgcgcgctgatgctcacg
ccgacgcgcgaactcgccgatcaggtcgccgccaacgtgcagacctactcgaagcacacg
ccgttgcgtagcaccgtcgtgttcggcggcgtcgacatgaatccgcagtccgacgcgctg
cgccgcggcgtcgaaatcctgatcgcgacgcccgggcgactgctcgatcacgtccagcag
aagacggtcaatctcggccaggtgcagatgctcgtgctcgacgaagctgaccgcatgctg
gacatgggctttctgcccgacctgcagcgcatcctgaatctgttgccgaaggagcgccag
acgctgctgttctcggctactttttcgcccgaaatcaagaagctcgcagccacctacttg
cgcgatccgcagacgatcgaagtcgcgcgcagcaattcgaccgctaccaacgtgcgccag
atcgttttcgaggtgcacgagagcgacaagtccggcgcggtcgcgcagctgattcgcgag
cgccaactgaagcaggtgatcgtgttctgcaacagcaagatcggcgcgagccggctcgcg
cgggtgctggagcgcgatggcatcatcgcgacggcgattcacggcgaccgctcgcagagc
gaacgcatgcaggcgctcgacgcgttcaagcgcggcgaggtcgaggcgctcgtcgcgacg
gacgtggccgcgcgcggtctcgatatcgccgaattgccggcggtcatcaacttcgatctg
ccgttcaacgcggaagattacgtgcaccgcatcggccgcacgggacgcgcgggcgcatcc
ggcgacgcgctgtcgctgtgcagcgcgaacgagcgcaagcagcttgccgatatcgaaaag
ctcatcaagcgtccgctggaagtcgagcaactcgtggtcgcgacgcgcgtgcatcgcgac
ggttcggcgccgctgcgccgcgacgagcgcttcggccgtccggagcgcggcgagcatcgc
catgcgccgcgtgaggaagcgggttcgcgtcgccgtgcgacgggctcgcacgaccgtccg
cgcggccgtcagcagcccgtcgacgagtttttcctgaagccttacgagccgtcgccgtcg
gcgatgaagcgtcacgaggaaacggtcgagccggaacgcaagagcgggccgaagcagccg
ctcgcggcgttgctcggcggtttgggcatgccgcgcaaatcgtcttga
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