Caballeronia sp. NK8: NK8_08960
Help
Entry
NK8_08960 CDS
T09553
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03030
DNA replication
cabk03430
Mismatch repair
cabk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NK8_08960 (dnaE)
03430 Mismatch repair
NK8_08960 (dnaE)
03440 Homologous recombination
NK8_08960 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cabk03032
]
NK8_08960 (dnaE)
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_08960 (dnaE)
Enzymes [BR:
cabk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NK8_08960 (dnaE)
DNA replication proteins [BR:
cabk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NK8_08960 (dnaE)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NK8_08960 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
BCQ22778
LinkDB
All DBs
Position
1:954621..958148
Genome browser
AA seq
1175 aa
AA seq
DB search
MYNTAMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYK
EARGKGVKPIAGCDVWITNPDDRDKPSRLLLLVRDKQGYLNLCELLSRAWLTNQYRGRAE
VMVEWLEGGLAEGLLALSGAQTGDIGMALAAGNAASAQRNAERWARLFPNAFYIELQRAG
QPGEQGYIQEAVALAAKLKLPVVATHPLQFMTADDYTAHEARVCISEGDILANPRRQKRF
TTDQYFRTQDEMCALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLI
QLSKEGLEVRLQQLYPDETERAAQRETYYARLNFECGTIIKMGFPGYFLIVADFIMWAKN
NGVPVGPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDR
VIQYVKGKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTI
ADAMKEEPTLQERFDSEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQ
GEDGGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKQDWNLAQVPLDD
PASFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARK
HGREIVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEM
AEHREIFAEGAAKNGLTRAKADETFDLMEKFAGYGFNKSHAAAYALLAYHTAWLKAHHPA
EFMAANMSLAMDDTDKVKILFEDCIGNGMKVLPPDINQSAYRFEPVAQADGTRSKTIRYG
LGAVKGSGQNAIEEILRAREDGPFVDLFDFCERIDRRVVNRRTVEALIRSGAFDTLHANR
AQLLASVPLAMEAADQAAANAMQAGLFDMGDAPLAKHEYVDEAEWSDKKRLQEEKTALGF
YLSGHLFDAYKGEVRRFVRQKIGELKEGRDKLVAGVISAMRTQMTQRGKMLIVNLDDGSG
QCEVTVFNEQFEANKALFKEDELLVVQGQARNDAFTGGIRFTVDTAMDLERARSRYAQSV
KVEMNGNADSMRLRRVLEAHAAGAQEAPPPAPARENGRSRQAAPIPNGLNVSIVYRSEHA
EGEVRLGDAWRVKPTDDLITALRGEFAGSAIEIVY
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgtacaataccgccatgtcagatccccgcttcgttcatctccgcgtccactccgaattc
tcgatcgccgacggcatcgtgcgactggacgacgtcgtcaaggctgccgcaaaagacggg
caaggcgcactcgcgctgaccgatctcggcaacgcattcggtctggtgcgcttctacaag
gaagcgcgcggcaagggcgtgaaacccatcgccggctgcgacgtctggatcaccaatccc
gacgaccgcgacaagccttcgcgcctgctcctgctcgtgcgcgacaaacagggctatctc
aatctgtgcgaactgctgagccgggcgtggctgacgaatcagtatcgcggccgcgccgag
gtgatggtcgaatggctcgaaggcggtctggctgaagggttgctcgcgctttcgggcgcg
cagacgggcgatatcggcatggcgctcgcggcgggcaatgcggccagtgcgcagcgcaat
gccgaacgctgggccaggctctttccgaacgcgttctatatcgagttgcagcgcgcgggt
cagccgggcgagcaggggtacattcaggaagccgtcgcgctggccgcgaaactgaagctg
cccgttgtcgccacgcatccgctgcagttcatgacggcggacgactacaccgcgcacgaa
gcgcgcgtgtgtatttccgaaggcgatatcctcgcgaatccgcgccgtcagaagcgcttc
acgacggatcagtacttccgcacgcaggacgaaatgtgcgcgctcttcgcggacattccg
tcggcgctcgcgaacaccgtcgagatcgcgaagcgctgcaatctaacgctcgaactcggc
aagccgaagctgccgctgttccctacgcccgatggcatgtcgctcgacgactatctcatc
cagttgtcgaaggaagggctcgaagttcgcctgcagcagctctatcccgatgagaccgaa
cgcgcagcgcagcgcgagacgtactacgcgcgtctgaacttcgagtgcggcaccatcatc
aagatgggctttccgggctacttcctgatcgtcgccgacttcatcatgtgggcgaagaac
aacggcgtgccggtcggtccgggccgcggttcgggcgcgggctcgctcgtcgcttacgcg
ctcggcatcacggatctcgacccgctgcgctacaacctgctgttcgagcgcttcctgaat
ccggaacgcgtgtcgatgcccgacttcgacatcgacttctgtcaggaagggcgcgatcga
gtcatccagtatgtgaagggcaagtacggcgccgacgcggtctcgcagatcgcgaccttc
ggcacgatggccgcgaaggccgcggtgcgcgacatcggccgcgtgctcgatctcggctac
atgttcacggacggcgtcgcgaagctgattccgttcaagccgggcaagcacgtgaccatc
gcggacgcgatgaaggaagagccgacgctgcaggagcgcttcgattccgaagacgaagtg
catcagctgctcgaactcgcgcaacgcgtggaagggctgacgcgtaacgtcggcatgcac
gcgggcggcgtgctgatcgcgccgggcaagctcacggatttctgcccgctctatacgcag
ggcgaagacggcggcgtcgtcagtcagtacgacaaggacgatgtcgaagccgtcggcctc
gtgaagttcgactttctgggtctgaccacgctcacgattctcgactgggccgagcgctat
atccgccgcctcgatccgtcgaagcaggactggaatctcgcgcaggtgccgctcgacgat
ccggcctcgttctcgattctgaagaaagccaacaccgtcgccgtgttccagcttgaaagc
cgcggcatgcagggcatgctgaaggacgctcagccggaccgcttcgaagacatcatcgcg
ctggtggcgctgtatcgtccgggtccgatggacctgatcccgagcttctgcgcgcgcaag
cacggacgcgagatcgtcgagtatccggacccgcgcgtcgagcccgtcctgaaagagacc
tacggcatcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctac
tcgctcggcggcgcggacttgctgcgtcgcgcgatgggcaagaagaagcccgaagaaatg
gccgagcatcgcgagatcttcgcggaaggcgcggcgaagaacggcctcacgcgcgcgaag
gcggacgaaaccttcgacctgatggagaagttcgcgggctacggcttcaacaagtcgcac
gcggcggcgtatgcgttgctcgcctatcacacggcgtggctgaaggcgcatcatccggcg
gaattcatggcggccaacatgtcgctcgccatggacgacaccgacaaggtgaagatcctg
ttcgaggactgcatcggcaatggcatgaaggtgctgccgccggacatcaatcagtcggca
tatcgtttcgagccggtcgcgcaggccgatggcacgcgctcgaagaccattcgctatggc
ctcggcgcggtgaagggcagcggccagaacgcgatcgaggaaatcctgcgcgcgcgcgag
gacggtccgttcgtcgatctgttcgacttctgcgaacgcatcgaccgtcgtgtcgtgaac
cgtcgcacggtcgaggcgttgattcgctccggcgcgttcgacacgctgcatgcgaatcgc
gcgcagttgctggcctcggtgccgctcgcgatggaagccgccgatcaggccgccgccaac
gcgatgcaggccggcctcttcgacatgggcgacgcgccgctcgccaaacacgaatacgtc
gacgaagccgagtggtcggacaagaagcgtctgcaggaagagaagaccgcgctcggcttc
tatctgtccgggcatctgttcgatgcctacaagggcgaagtgcgccgcttcgtgcgccag
aaaatcggcgaactgaaggaaggacgcgacaagctggttgcaggcgtgatttcggcgatg
cgcacgcaaatgacccagcgcggcaagatgctgatcgtcaatctcgacgacggcagcggc
cagtgcgaagtcaccgtgttcaacgaacagttcgaagcgaacaaggcgctcttcaaggaa
gacgagctgctcgtcgtgcaggggcaggcgcgcaacgacgcgttcaccggcggcatccgc
ttcactgtcgatacggcgatggacctcgaacgcgcgcgcagccgctacgcgcagtccgtg
aaggtcgagatgaacggcaatgctgactctatgcgtctgcgccgtgtgctcgaagcgcat
gcggcgggcgcgcaggaagcgccgccgccggctccggcgcgcgagaacggccgctcgcgt
caagccgcgccgattccgaacggcctgaacgtgagcatcgtctatcgcagcgagcatgcc
gaaggcgaagtgcgcctcggcgacgcgtggcgcgtcaagcccaccgacgacctcatcacg
gcgctgcgcggcgaattcgcgggcagcgcgatcgaaatcgtctactga
DBGET
integrated database retrieval system
