Caballeronia sp. NK8: NK8_09290
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Entry
NK8_09290 CDS
T09553
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NK8_09290 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_09290 (recB)
Enzymes [BR:
cabk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NK8_09290 (recB)
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NK8_09290 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
DUF374
AAA_11
Motif
Other DBs
NCBI-ProteinID:
BCQ22811
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All DBs
Position
1:999155..1002835
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AA seq
1226 aa
AA seq
DB search
MTTSFVDDTVQELDVFACALDGVNQIEASAGTGKTWNICALYVRLLLEKRLSVEQILVVT
FTKAATAELHERIRSRLAGVAQSIENGDAAGDPFIERLFETTLADIDAEEAAKRLRIAVA
TFDQAAIHTIHAFCQRALQEAPFAAAMPFAFDMEADDSALRFELAADFWRERVEPVAART
PSFASWLVAKGAGPASLDAQLARRLKKPLAALRWGGAEATQAADVQALFEEACALWNAER
DTIVKLLADAQGALKGNSYSAKIVSEAIDAWTAYFAEGDCHAPPPERALKLTASALAKGT
KLRNTPPAHAFFDQADMLAASAAAAEASQRAMWLDVVREWLGHAPAELAARKRARRVVSF
DDLLSNLHHALVRHAWLAEALRARYPAALIDEFQDTDPLQYAIFNRVFAPHGPLFLVGDP
KQAIYSFRAADLHTYLAARHGASARYTLAVNQRSTPPIIEACNRLFEANPAAFILDGLDY
QPVRAGTRKRGPFIDETPAAAYSDIADFCVWMLPHGESALLKTNAQRDAAEACAAEIARL
LRGAQRGEVRIGARPLSAGDIAVLVQTHRQGSLVKRVLAAWGIGSVELAQASVFGSLDAE
QIERVLAAIDTPGDLRRLRAALATDWFGLDAAALWRLEHADAADPHGEPIDSTSWVERFS
RYRTIWHERGFAVMWRTLARELSIATRLVARADGERRLTNVNHLAELLQARSAEQPGIAP
TLRWLAAQREQQGGGEEAQLRLESDRNLVQIVTIHKSKGLEYAVVFCPFLNDGAARDASK
TGLPDAREYHDDAGVAVLHYGIEADEDEHVSAAIAREQAAERARLVYVALTRAVFRCYVV
AGVYMSSRSTKESRRSVLNWLVAGKGRDFDAFCHEPPEEADIAAAWHALAAQANGAIGVA
PLPVIDVREPLVADTSGAHEIAARTNKRILRDRWRMASFSSLIAAGARDEANQAQPAEAR
PDHDELAALKDIVRTEAPALAADDILAFPRGAAAGECLHRMFELADFTAPSGWDSAVERA
LHEHPTPAPEALAPRLRPMMLRLLADTLATEIAPGMQLENIAMTRRMNELEFLFSAETLD
FTALRRLLAAHGFPDVALESGALRGFIKGFIDMIVEHDGRYWIIDWKSNHLGDAVSDYAA
APLAVAMNEHAYHLQALIYVVALHRYLRARLAGYAYDTHIGGYLYLFVRGVRPDWRDGES
PAGVHRGRPSRELVEALDRLMSGGAA
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatcattcgtggacgacaccgtgcaggaactcgacgtcttcgcttgcgcgctc
gacggcgtgaaccagatcgaggcttccgccggcacgggcaagacctggaacatctgcgcg
ctgtatgtgcgcctgttgctggagaagcggctcagcgtcgagcagattctcgtcgtcacc
ttcacgaaggcggcgaccgccgagctgcacgagcgcatccgttcgcggctcgcgggcgtc
gcgcagtccatcgagaacggcgatgctgccggcgatccgttcatcgagcggctcttcgaa
acgacgcttgccgacatcgacgccgaggaggccgccaaacgtctgcgcatcgccgtggcc
acgttcgatcaggcggcgatccacacgattcacgcgttctgtcagcgcgcgctgcaggaa
gcgccgttcgccgccgcgatgccgttcgcgttcgacatggaagccgacgacagcgcgctg
cgcttcgaactcgcggcggatttctggcgcgaacgcgtggagccggtggcggcgcgcaca
ccgtcgttcgcgtcgtggctcgtcgcgaagggtgcggggcccgcatcgctcgacgcgcag
ctcgcacggcgtctgaagaagccgctcgcggcactgcgctggggcggcgccgaggcaact
caggccgccgacgtgcaggcgctgttcgaagaggcctgcgcgctgtggaacgctgagcgc
gacaccatcgtcaagctgcttgcggacgcgcagggcgcgctcaagggcaacagctacagc
gcgaagatcgtcagtgaagctatcgacgcatggactgcgtatttcgccgagggcgactgt
cacgcgccgccgcccgagcgcgcgctcaagctcacggcgagcgcgctggcgaagggaacc
aagctcaggaacacgccgcccgcgcacgcctttttcgatcaggccgatatgctcgccgcg
tccgccgccgcagccgaagcatcgcagcgcgcgatgtggctcgacgtcgtgcgtgagtgg
ctcggtcacgcgccggcggagcttgccgcgagaaagcgcgcgcgccgcgtcgtgtcgttc
gacgatctgctgtcgaacctgcatcacgcgctggtccggcacgcgtggctcgccgaagcg
ctgcgcgcgcgctatccggccgcgctcatcgacgaattccaggacacggacccgctgcaa
tacgcaatcttcaaccgcgtgttcgcgccgcacggcccgctctttctcgtcggcgatccg
aagcaggcgatctacagcttccgcgccgccgacctgcacacgtatctcgccgcgcgccac
ggcgcgagcgcgcgctatacgctcgcggtcaatcagcgctcgacgccgccgatcatcgag
gcatgcaaccgcctgttcgaagcgaatccggccgcgttcattctcgatggcctcgactac
cagccggtgcgcgcgggtacgcgcaagcgcggcccgttcatcgacgaaacgcccgccgcc
gcgtattcggacatcgcggatttctgcgtgtggatgctgccgcacggcgaatccgcgctt
ctgaaaacgaacgcgcagcgcgatgccgccgaagcctgcgccgccgagatcgcccggctc
ttgcgcggggcgcagcgcggcgaggtgcgtatcggcgcacggccgctttcggcgggcgat
atcgccgtgctcgtgcagacgcatcggcagggcagcctcgtgaagcgcgtgctagcggcg
tggggaatcggcagcgtggaactggcgcaggcgtcggtattcggttcgctcgacgctgag
cagatcgagcgcgtgctcgccgccatcgacacgcccggcgatttgcgccgcctgcgcgcc
gcgcttgccaccgactggttcggtctcgacgccgccgcgctctggcggctcgaacacgcg
gacgcggccgatccgcacggcgagccgatcgattcgacgagctgggtcgagcgcttttcg
cgctatcgcacgatctggcacgagcgcggtttcgcggtgatgtggcgcacgctcgcgcgc
gagctgtcgatcgcgacgcgtctggtcgcacgcgccgatggcgagcgccggctcacgaac
gtcaatcatctcgcggagctgttgcaggcgcgctcggccgagcagcccggcatcgcgccg
acgctgcgctggctggccgcgcaacgcgagcagcagggcggcggcgaagaagcgcaactg
cgcctcgaatccgaccgcaatctcgtgcagatcgtgaccatccacaagtcgaaggggctg
gagtacgcggtcgtgttctgtccgttcctgaacgatggagccgcgcgcgatgcgtcgaaa
acaggcttgcccgatgcgcgcgagtatcacgacgacgcgggcgttgcggtgctgcattac
ggcattgaggccgacgaggacgaacacgtgagcgcggccatcgcgcgcgagcaggcggcc
gaacgcgcgcgcctcgtgtatgtcgcgctgacgcgcgcggtgttccgctgctacgtcgtc
gcaggggtctatatgtcgagccgctcgacgaaggaatcgcgccgcagcgtgctcaactgg
ctcgtcgcgggcaaggggcgcgacttcgatgcgttctgccatgagccgcccgaggaagcg
gatatcgccgccgcgtggcacgcgctcgcggcgcaggcaaacggcgcgatcggcgtcgcg
ccgctgccggtcatcgacgtgcgcgagccgctcgtcgcggacacgtcgggcgcacacgag
atcgccgcgcgcacgaacaagcgcattctgcgcgatcgctggcgcatggcgagcttcagt
tcgctgatcgccgccggcgcgcgcgacgaggcgaatcaggcgcagccggccgaagcgcgt
cccgatcacgacgagcttgccgcgctcaaggacatcgtgcggaccgaagcgcccgcactc
gccgccgacgacattctcgcgtttccgcgcggcgcggcggcgggcgaatgtctgcatcgc
atgttcgagctcgccgatttcacggcgccttcgggctgggacagcgccgtcgagcgcgcg
ttgcacgagcatccgacgcccgcgcccgaggcgctcgcgccgcgtctgcgtccgatgatg
ctgcgcctgctcgccgatacgctcgccaccgaaatcgcgcccggcatgcagcttgagaac
atcgcgatgacgcgtcgcatgaacgagctggagtttctgttctccgccgagacgctcgat
ttcactgcgctgcggcgtctgctcgccgcgcacggctttcccgatgtcgcgctcgaaagc
ggcgcgttgcgcgggttcatcaagggattcatcgacatgatcgtcgagcacgacgggcgc
tactggatcatcgactggaagtcgaatcatctgggcgacgccgtatcggactatgccgcc
gcgccgcttgccgtcgcgatgaacgagcatgcctatcatctgcaggcgctcatctacgtg
gtcgcgctgcatcgctatctgcgcgcgcgtctggcgggttatgcgtacgacacgcatatc
ggcggctatctgtatctcttcgtgcgtggcgtacgccccgactggcgagatggcgagtcg
cctgccggcgtgcatcgcggccggccctcgcgggaactggtggaggcgctcgatcgcctg
atgtccggaggcgcggcatga
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