Caballeronia sp. NK8: NK8_09610
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Entry
NK8_09610 CDS
T09553
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cabk
Caballeronia sp. NK8
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabk03019
]
NK8_09610 (hrpA)
Enzymes [BR:
cabk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
NK8_09610 (hrpA)
Messenger RNA biogenesis [BR:
cabk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
NK8_09610 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
NACHT
AAA_19
T2SSE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
BCQ22842
LinkDB
All DBs
Position
1:1032630..1036385
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AA seq
1251 aa
AA seq
DB search
MIVSGETGSGKTTQLPKICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFG
EVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLG
YLKEILPKRPDLKLIVTSATIDAERFARHFGRDDKPAPVIEVSGRLYPVEVRYQPIEEES
EAIKNAQGTLPRRNDRKADRDLMEAIVDAVDDLCRVGPGDVLVFLPGEREIRDTAEALRK
HHPPHTEILPLFARLSAQEQERVFRPSNARRIVLATNVAETSLTVPGIRYVVDTGMARVK
RYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFQARPRFTDPEILRSS
LASVILRMKSLHLTEIETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLP
LDPRVGRMILAARDHHALKEVLIIASAVSVQDPRDRPIEAQEQADQAHRLFVDERSEFLQ
WTRIWKWFEDAVAHKKSNKQLADACRANFLSHLRLREWRDVHSQLLTVVREHGWRLNDSD
ATFEQVHLSLLTGLLGNVGLKADDEPHYLGARGIKFHLWPGSALLKKAGRWVMAGELVET
SRLYARTIAKIEPEWLETVGAHLLKKSLSDAHWEKKAAQVVAYERATLYGLTVYARRRVS
YGQQDAKYARELFIRGALVEGEFDTRLPFFAHNRKLVADIEQLEHKSRRQDVLVDDELIY
GYYDSLIPEGMWTGAAFERWYRDEQKKAGNEKLLFLSRDDLMRHEAAGVTTDLFPKRMTM
SGIEMSLTYHFEPGSPRDGVTLAVPLYGLNQVDARRVEWLVPGMIKEKAQLLLKSLPQKL
RRHVVPLPEYAAGFAERHSGPKFGAGALVDSLIADIRAQTQVAVKSADFKLETLPAHLFM
NFKVIDEHGRQLAMGRNLAQLRAELGGQAQQQFQKLTSAAASVALDALSGDTSTPPAQPS
GETSSGTALYENLTTWNFGKLPELLEIRRRGQTLFGYPALVDRGTHCDVEVFDSPEEAAR
IHRAGLRRLFALQLREPIRYLEKNLPGLREMSMQYMALGTADELRDQIVDTALDRACLQD
PLPDDDATFHARRDAAKGRLTLLAQEIARLVGTILAVYAALGKKLAQAKSFTSAYADLQA
QLNALIGKRFVIDTPYVQLAHFPRYLKGIGLRIDKLKADPARDARLLADLQPLAQHYQRA
MSQRGGVADARLSEYRWLLEELRVSLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcagcggcgaaaccggctcgggcaagaccacgcagctcccgaaaatctgcctc
gcgctcggacgcggtctcggcgcgggcggcagcgggctgatcggtcacacgcagccgcgc
cgtatcgccgcttcggccacgggccggcgcatcgcggaggagcttggcacgccgttcggc
gaagtggtcggctacaaggtgcgcttcacggacaatctcgcgccgggcgcgtcggtcaag
ctgatgaccgacggcatcctgctcgcggaaacgcagaccgatccgctgctcaaggcctac
gacacgatcatcatcgacgaggcgcacgaacgcagcctcaacatcgactttctgctcggc
tatctgaaggaaatcctgccgaagcgcccggatctgaagctgatcgtcacgtccgcgacc
atcgacgccgagcgtttcgcgcgccatttcggccgcgacgacaaacccgcgccggtgatc
gaggtgagcgggcggctgtatccggtggaagtgcgctatcagccgatcgaggaagaaagc
gaagcgatcaagaacgcgcaaggcacgctgccgaggcgcaacgaccgcaaggccgatcgc
gatctgatggaagccatcgtcgatgccgtcgacgatctgtgccgcgtcggccccggcgac
gtgctcgtgttcctgcccggcgagcgcgaaatccgcgataccgccgaggcgctgcgcaag
catcacccgccgcacacggaaatcctgccgctcttcgcgcgtctctccgcgcaggagcag
gagcgcgtgttcaggccgtcgaacgcgcggcgcatcgtgctggcgaccaatgtcgcggaa
acgtcgctgacggtgccgggcatacgctatgtcgtcgataccggcatggcgcgcgtgaag
cgctattcgtatcgcaacaaggtcgagcagttgcagatcgagccggtgtcgcaggcggcg
gcgaaccagcgcgccggccgctgcgggcgcgtcgcggacggcgtgtgcatccgtctctac
gacgaagcggatttccaggcgcggccgcgcttcaccgatccggaaatcctgcgctcgtcg
ctcgcgtccgtaattctgcggatgaagtcgctgcatctgacggagatcgagacttttccg
ttcatcgagccgccgccgggacgcgcgatcgcggacggctatcaactgctgaacgaactc
ggcgcggtcgatgacgacaacgcgctcacgccgctcggccgcgaactcgcgcgcctgccg
ctcgatccgcgcgtcggccgcatgattctcgccgcgcgcgatcatcacgcgctgaaggaa
gtgctgatcatcgcctcggcggtgtcggtgcaggacccgcgcgaccggccgatcgaggcg
caggagcaggcggatcaggcgcatcggctgttcgtcgacgagcgctccgaattcctgcaa
tggacgcgcatctggaagtggttcgaggacgccgtcgcgcacaagaaatcgaacaagcag
ctcgccgatgcgtgccgcgcgaacttcctgtcacatctgcggctgcgcgaatggcgcgat
gtgcattcgcaattgctgacagtcgtgcgcgaacacggctggcgtctgaacgattccgat
gcgactttcgagcaagtgcatctgtcgcttttgacgggcctgctcggcaacgtcggactg
aaagccgacgacgagccgcattatctcggcgcgcgcggcatcaagttccatctgtggccg
gggtccgcgctgctgaagaaagcggggcgctgggtgatggcgggcgaactcgtcgaaacg
agccggctgtacgcgcgcacgatcgcgaagatcgagccggaatggctcgaaacggtcggc
gcgcatctgctgaagaaatcgctgtccgacgcgcactgggagaagaaggccgcgcaggtc
gtcgcgtacgagcgcgcgacgctctacgggctgacggtctacgcgcgccggcgcgtgagc
tacggccagcaggacgcgaaatatgcgcgtgagctgttcatccgcggcgcgctcgtcgaa
ggcgaattcgacacgcggttgccgttcttcgcgcacaaccgcaagctggtcgccgatatc
gagcaactggagcacaagtcgcgccgccaggacgtgctcgtcgacgatgaactcatctac
ggttactacgattcgctgattcccgaaggcatgtggacgggtgcggcgttcgagcgctgg
tatcgcgatgaacagaagaaggcgggcaacgagaagctgctgttcctctcgcgcgacgac
ctgatgcgccacgaggccgccggcgtcacgaccgatctgttcccgaagcgcatgacgatg
tcgggcatcgagatgtcgctgacctatcacttcgagccgggttcgccgcgcgacggcgtg
acgctcgcggtgccgctgtacggtctcaatcaggtcgatgcgcgccgcgtcgaatggctc
gtgccgggcatgatcaaggagaaggcgcaactgctgctgaagtcgctgccgcagaaactg
cgccggcacgtcgtgccgttgccggaatacgcggcgggtttcgccgaacgtcattcagga
ccgaagttcggcgcgggcgcgctggtcgattcgctcatcgccgatattcgcgcacagacg
caagtcgctgtgaaaagcgccgatttcaagctggaaacgctgcccgcgcacctgttcatg
aacttcaaggtgatcgacgaacacggccgccagctcgcgatgggccgcaatctcgcgcaa
ctgcgcgcggaactcggcggtcaggcgcagcagcagttccagaaactgacatcggcggct
gcgagcgtcgcgctcgatgcgctgtccggagacacgagcacgccgccagcgcagccgtcc
ggtgaaacgtcgtccggcaccgcgctctacgaaaatctcacgacgtggaacttcggcaag
ctgcccgagctgctcgaaatccgccgacgcgggcagacgctcttcggctatccggcgctc
gtcgatcgcggcacgcactgcgacgtcgaagtgttcgattcgcccgaggaagcggcgcgc
atccatcgcgcgggcctgcggcggctgttcgcgctgcaactgcgcgagccgatccgctat
ctggagaaaaacctgccgggcctgcgcgaaatgtcgatgcaatacatggcgctcggcacc
gccgacgaactgcgcgatcagatcgtcgacacggcgctcgatcgcgcgtgtctgcaagac
ccgcttcccgacgacgacgccaccttccacgcccgccgcgacgccgcgaaagggcgtctc
acgctgctcgcgcaggaaatcgcgcggctcgtcggcacgattctggccgtatatgcggcg
ctcgggaaaaagctggcgcaggcgaaatcgttcacgtcggcctatgcggacttgcaggcg
caattgaacgcgctcatcggcaagcgctttgtgatcgatacgccgtatgtgcaactggcg
cactttccgcgctatctgaagggaatcggcctgcgcatcgacaagctcaaggccgatccg
gcccgcgacgcgcgcctgctcgccgatctgcaaccgctcgcgcagcactatcagcgcgcg
atgtcgcaacgcggcggagtcgcggatgcgcgcctgtccgagtatcgatggttgctcgaa
gaactgcgcgtgtcgctgttcgcgcaggaattgcgcacgccgatgccggtttcggtgaaa
cgcctctataaggtatgggaatcgatgcagcgctag
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