Caballeronia sp. NK8: NK8_11790
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Entry
NK8_11790 CDS
T09553
Name
(GenBank) 2'-5' RNA ligase family protein
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cabk
Caballeronia sp. NK8
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cabk03016
]
NK8_11790
Enzymes [BR:
cabk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
NK8_11790
Transfer RNA biogenesis [BR:
cabk03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
NK8_11790
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Acb1
Motif
Other DBs
NCBI-ProteinID:
BCQ23056
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All DBs
Position
1:1261542..1262078
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AA seq
178 aa
AA seq
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MSVDFSSRITDSLFFALYPDEPAAARIAELAARLRIEHKLKAKPIPTDRLHVTLHYLGAF
AGLPADVLTQARAAASQIALSPVEVTLDRIESFSGRRSKRPLVLSGDVTGPLAALQQALG
AAQRHPRFTPHVTLLYDEQRIAREPVTPITWTAREFALVRSVLGKSHYDVLARWPLGL
NT seq
537 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatttctcctcacgcatcaccgactcgctcttcttcgcgctctatcccgac
gaacccgccgccgcgcgcatcgccgaactggccgcgcggctgcgcatcgagcataagctg
aaggcgaagccgattcccaccgaccgccttcacgtcaccctccattacctcggcgctttc
gcgggcctccccgccgatgtgctcacgcaagcgcgtgccgccgcctcccaaatcgcgctg
tcacccgtcgaagtgacgctcgaccggatcgaaagcttctccggccgtcgctcaaagcgt
ccgctggttctctcgggcgatgtcaccgggccactcgccgcactccagcaagccctcggc
gccgcacaacgccatccgcgcttcacgccccacgtgaccttgctctacgacgagcagcgc
atcgcgcgcgaacccgtcacacccatcacctggaccgcgcgcgagtttgcgctcgtgcgc
agcgtgctaggcaaatcgcattacgacgtcctcgcgcgctggcccctcgggctttga
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