Caballeronia sp. NK8: NK8_17750
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Entry
NK8_17750 CDS
T09553
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NK8_17750 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cabk03019
]
NK8_17750 (pnp)
03016 Transfer RNA biogenesis [BR:
cabk03016
]
NK8_17750 (pnp)
Enzymes [BR:
cabk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NK8_17750 (pnp)
Messenger RNA biogenesis [BR:
cabk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NK8_17750 (pnp)
Transfer RNA biogenesis [BR:
cabk03016
]
Prokaryotic type
tRNA degradation factors
NK8_17750 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KhpA-B_KH
UPF0181
DUF5813
Motif
Other DBs
NCBI-ProteinID:
BCQ23633
LinkDB
All DBs
Position
1:complement(1862388..1864511)
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AA seq
707 aa
AA seq
DB search
MFNKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL
NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA
GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQTAIDAIHELVREGGKPEWDWKPAAKNE
ALISRVTEIAKSELEAAYQLRNKQARSTKLKEVYAATSAKLAEEAVVADAATIGNVLFDI
EAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVATLGTKG
DEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVACLPSADE
FGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKFAVLTD
ILGDEDHLGDMDFKVAGTAQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILGKMTEA
VPSTNTELSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVVTIAST
SAEGMADAKKRIENITAEVEVGQVYEGPVLKLLDFGAIVNILPGKDGLLHISEIVNERVK
DINDYLKEGQIVKVKVIQTDEKGRVRLSAKALLNEGAQQAEPTHPQQ
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaaatcgtcaaagaatttaagtggggacagcacaatgtccgcctggaaacg
ggtgagatcgctcgtcaggcaagcggcgcggtgatcgtcgatgtcgaagacaccgtcgtg
ctcgcgaccgtcgtcggcgcgaagaccgccaagccgggccaggacttcttcccgctgacc
gtcgattacctcgaaaagacctacgccgccggcaagattccgggcggcttcttccgccgc
gaaggccgtccgtcggaaggcgagacgctgatctcgcgcctgatcgaccgcccgctgcgc
ccgctcttcccggaaggcttctataacgaagtgcaggtcgtgatccacgtcctgtcgctg
aacccggacgttccggcggacattcccgcgctgatcggcgcatccgccgcgctggccgtg
tcgggcctgccgttcaacggtccggtcggcgccgcgcgcgtcgcctacatcaacaacgag
tacgtgctgaacccgacgcgcccgcagatgaaggaatcggcgctcgacctgatcgtcgcc
ggcaccgagcgcgccgtgctgatggtggaatcggaagcgcagcaactgagcgaagaagtg
atgctcggcggcgtcgtgttcggtcacgagcagatgcagacggccatcgacgcgattcac
gaactcgtgcgcgaaggcggcaagccggaatgggactggaagcctgccgcgaagaacgaa
gcgctcatttcgcgcgtgacggaaatcgccaagtcggaactggaagcggcttaccagttg
cgcaacaagcaggcgcgttcgaccaagctgaaggaagtctacgcagcgacctccgcgaag
ctcgccgaggaagcagtggtggccgatgcggcaaccatcggcaacgtcctgttcgacatc
gaagcgaagatcgtccgctcgcagatcctcaacggcgaaccgcgtatcgacggccgcgac
acgcgcacggtgcgtccgatcgaaatccgcacgggcgtcctgccgcgtacgcacggctcg
gcgctcttcacgcgcggcgaaacgcaggcgctggtcgtcgcgacgctcggcacgaagggc
gatgagcagaacatcgacgcgctcgaaggcgaataccgcgagcgcttcatgctccactac
aacatgcctccgttcgcgaccggcgagacgggccgcgtcggctcgccgaagcgtcgtgaa
atcggtcacggccgactggccaagcgcgcgctggtcgcgtgcctgccgagcgccgatgaa
ttcggctactcgatccgtgtcgtgtcggaaatcacggaatcgaacggttcgtcgtcgatg
gcttcggtctgcggcggctgcctcgcgctgatggacgccggcgtgccgatgaaggcgcac
gtcgcgggcatcgcgatgggcctgatcctcgaaggcaacaagttcgcggttctgaccgac
atcctcggcgacgaagatcacctcggcgacatggacttcaaggtggccggcacggcgcaa
ggcgtgaccgcgctgcagatggacatcaagatccagggcatcaccaaggaaatcatgcag
gtcgcgctcgcgcaggcgaaggaaggccgcatgcacatcctcggcaagatgacggaagcc
gtgccgagcaccaacacggagctgtcggactacgcgccgcgcatgatcaccatcaagatc
aatccggagaagatccgcgacgtgatcggcaagggcggttcggtgatccgcgcgctgacg
gaagaaaccggcacgaccatcgacatttcggacgacggcgtcgtgacgatcgcgagcacg
agcgccgaaggcatggccgacgcgaagaagcgcatcgagaacatcacggctgaagtggaa
gtgggtcaggtctacgaaggcccggtgctcaagctgctcgacttcggcgcgatcgtgaac
atcctgccgggcaaggacggtctgctgcacatctccgagatcgtcaacgagcgcgtgaag
gacatcaacgactatctgaaggaaggccagatcgtgaaggtcaaggtcatccagacggac
gaaaagggtcgtgtgcgtctgtcggcgaaggcgcttctgaacgaaggcgcgcaacaggcg
gaacccacgcacccgcagcagtaa
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