| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) DNA-directed RNA polymerase subunit beta'
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| KO |
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| Organism |
cabk Caballeronia sp. NK8
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:cabk00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NK8_25870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:cabk03021]
NK8_25870 (rpoC)
03400 DNA repair and recombination proteins [BR:cabk03400]
NK8_25870 (rpoC)
Enzymes [BR:cabk01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NK8_25870 (rpoC)
Transcription machinery [BR:cabk03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NK8_25870 (rpoC)
DNA repair and recombination proteins [BR:cabk03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NK8_25870 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
1:complement(2710631..2714872)
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| AA seq |
1413 aa
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYASREAINGKGEGMTFTGVSEVIRAYENK
EVELASRVNVRITEMVANEDTSEGAPAFVPKISLYATTVGRSILSEILPPGLPFTVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQMGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSESVGKAMMEQLATEPVTDRDGNETK
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLYASGDLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASTVEAKSN
GTVRFTATMRYVTNAKGEQVVISRSGEAIIADDFGRERERHKVPYGATLLQLDGAQIKAG
AQLAQWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIPGEQVERSDMLDENDRMIADDKRPASYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKAKES
SDRERFDQIAAEEAFDFGTPEAPATEQAPHTNE |
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| NT seq |
4242 nt +upstreamnt +downstreamnt
atgaaagctctgctcgatctattcaagcaagtccaacaagaagaagtttttgatgcgatc
aagatcggcctcgcgtcgcccgacaagattcgttcttggtcgttcggcgaagtgaagaag
ccggagaccatcaactaccgcacgttcaagccggagcgggatggtctgttctgcgcgaag
atttttggtccgatcaaggactacgaatgcctttgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtcgaagtgacgctggcgaaggtgcgtcgcgaa
cggatgggccacatcgaactggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcatacgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
acggaagaggattactacaacaaggtcgaagagtacggtgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgcgcgatcaacatcgacgaacaggtcgagatg
ctgcgcaccgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaagtgctcgaggcattccagcgttcgggcatcaagccggactggatggtgctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgtttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtctgctcgaactgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggtcgtcgcggcaaggccatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggccgcttccgtcag
aacctgctcggtaagcgcgtggactattcgggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagcctttc
atcttcaacaagctggaagtgatgggcgtcgcgacgaccatcaaggccgcgaagaaggaa
gtcgaaaaccagacgccggtggtgtgggacattctcgaagaagtcattcgcgaacatccg
gtcatgctgaaccgcgcgcctacgcttcaccgtctcggcattcaggcgttcgagccggtg
ctgatcgaaggcaaggcaattcagcttcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctcatgctggcgtcgaacaacgtcctgttcccggctaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggcctgtactacgcgtcgcgtgaagcgatcaacggc
aagggcgaaggcatgacgttcacgggcgtgtcggaagtgatccgcgcgtacgagaacaag
gaagtcgagctggcttcgcgcgtcaacgtgcgtatcaccgaaatggtggcgaacgaagac
acgagcgaaggcgcgccggcgttcgtgccgaagatctcgctgtacgcgaccacggtcggc
cgttcgatcctgtcggagattctgccgccggggctgcccttcacggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacacggcgttccgcaagtgcggtctgcgc
gagacggtgatcttcgccgaccagctgatgcagatgggtttccgtcttgcaacgcgcgcc
ggcatctcgatctgcgtggacgacatgctcgtgccgccgcagaaagagacgatcgtcggc
gacgccgcgaagaaggtgaaggagtacgaccgtcagtacatgtcgggtctcgtcaccgcg
caggaacgctacaacaacgtggtcgacatctggtcggcgacgtcggaaagcgtcggcaag
gcgatgatggaacagctcgcgacggagcctgtcaccgaccgtgacggcaacgagacgaag
caggagtcgttcaactccatctacatgatggccgactcgggcgcgcgtggttccgcggtg
cagattcgtcagctggccggtatgcgcggcctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcccgtaagggtctggcggatacggcgctgaagactgcgaactcgggttac
ctgacgcgtcgtctggtcgacgtgacgcaggatctggttgtcgtcgaagacgattgcggt
acgtcgaacggcgtggcgatgaaggcgttggtggaaggcggtgaagtcgtcgaagcgctg
cgcgaccggattctcggccgcgtcgcggtggcggacgtcgtcaatccggaaacgcaggaa
acgctgtacgcgtcgggcgatctgctcgatgaagacgcggtcgaggaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgtacgccgcttacttgcgaaacgcgctatggcctgtgc
gccgcgtgctacggccgcgacctcggccgcggttcgcgcgtgaacgtcggcgaggcggtt
ggtgtgatcgccgctcagtcgatcggtgagccgggcacgcagctgacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcggcggttgcttcgacggtcgaagcgaagagcaac
ggtacggtgcgcttcacggccacgatgcgttacgtcaccaacgcgaagggcgagcaggtc
gtcatctcgcgttcgggcgaggcgatcatcgcggacgacttcggtcgcgagcgtgagcgt
cacaaggttccgtacggcgcgaccctgctgcagctcgacggcgcacagatcaaggccggc
gcgcaactggcgcaatgggatccgctgacgcgtccgatcatcaccgagtggggcggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggttgcgaagcagatcgacgatgtgacg
gggctttccacgctcgtcgtgatcgacgtgaagcgtcgcggctcgcaagcttcgaagagc
gtgcgtccgcaggtgaaactgctcgacgcgaacggcgaggaagtgaagatcccgaacacc
gagcattcggtgcagatcggcttccaggtcggcgcactgatcaccgtgaaggatggtcag
caagtgcaggtcggtgaagtgctggcgcgtatcccggttgaagcgcagaagacgcgtgac
attaccggtggtctgccgcgcgtggccgaactgttcgaagcgcgctcgccgaaggacgcg
ggtattctcgcggaagtcacgggcacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggtgctggtgcacgatggtcaggtcgtcaacaagggcgaaatgatcgtcgacggtcct
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgttgtcgcgctacatcgtg
gatgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgaa
gtgatcgtgcgtcagatgctgcgtcgtgtgcagatcgtcgacaacggcgatacgcgcttc
atcccgggcgagcaagtcgagcgttcggacatgctggacgagaacgaccgcatgatcgcg
gacgacaagcgcccggcgtcgtacgacaacgttctgctcggtatcacgaaggcatcgctg
tcgaccgattcgttcatctccgcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgtggcctgaaggaaaacgtgatcgtcggc
cgtctgattccggccggtacgggtctcgcgttccacaaggcgcgcaaggcgaaggaatcg
tcggatcgcgagcgtttcgaccagatcgcggccgaagaggcattcgactttggcacgccg
gaggctccggcaacggagcaggcgccgcataccaacgagtaa |
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