Caballeronia sp. NK8: NK8_28940
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Entry
NK8_28940 CDS
T09553
Name
(GenBank) DEAD/DEAH box helicase
Organism
cabk
Caballeronia sp. NK8
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MZB
DUF559
DUF2321
AAA_19
RNR_Alpha
Motif
Other DBs
NCBI-ProteinID:
BCQ24718
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All DBs
Position
1:complement(3032992..3038331)
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AA seq
1779 aa
AA seq
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MDVFQFREHIVAEYEQFTRSFTRIRADDIRDYVNEQYASQRYWPEPLIQINPNFKSGGTV
EELVEAGQLSAQCTDIFRLGKSSSSGGVSLPLHKHQAEAISLAADGESYVLTTGTGSGKS
LSYFIPIVDACLKAKATDPTPKTRAIVIYPMNALANSQLEELKKFLGSNPAERAVTFGRY
TGQESDEERQAMAANPPDILLTNFMMLELLMTRQSDIDKAVMRNAKGLRFLVLDELHTYR
GRQGADVALLVRRVREALAENLVCIGTSATMATEGTQMARNAVVADVASRLFGTRIYDRN
IITETLRRTTPEEETVATVATLLRDAVRAGVPETADFASLASHPVSVWVELTLGLTYEGD
KPRRARPRTLAKAAELLNETSGEPVDACRDYLRKFMLLAYAVQDEAGKSLFAFKLHQFIA
GGGKVYATLEAPRHRAITLDGQQYVSGDDSRVRRYYHVHFCRDCGQEYMPVWDAESLEGR
TFDVRGIEERQHDDDEVKFGFLLPGLESWDPSDPERYPEGWVEERADGEWRVKSDKRKFI
PQAINVRPDGVVTNGPGMNAWFIPGAYRFCPACGTTHTTSGKDVLRLTSLSGEGRSSATT
MLTLSALRYLYEQDQQLDFEAKKVLGFSDNRQDAALQAGHFNDFLQVLLTRSALLSAVEK
SPSKVLSEKEVANAVFEALGFHRDDLGVRAEYMQQPEVKGNTRRQVQEAMRGILGYRSYF
DLRRGWRFNNPNLEQLGLVRIDYQDIDDLAADDDEWADAPQVLQAARPAERAIVLRALFD
FMRQGLCIATRYLDRTELEQLRTQSYANLCEPWGFTEDERPQPAKWFVTARPREETDRKG
RRLDLDDFLVIGSSRSRLGRELRKGSTWGGANPYYRQINDHTYPEVLTALLRAAESYGLV
RKEETDVGLTGWQLNGAALVWTVGSGQSARQADDNIFFRGLYQNIAALLESPVHQLFDFE
AREHTAQVEQEDRLEREARFRFTEKDKTEWQTKNGTALEWLPVLFCSPTMELGVDISSLN
TVYMRNVPPTPANYAQRSGRAGRAGQPALVITYCAAQSPHDQYYFRDPVRMVHGQVNAPT
LDLANRELIKSHMHAIWLAETGKKLGNSVRDLLDMNQPEKLPITMEMAFDLDKPEAKLSA
HKRGLKVLGMLKDELTSQKAPWFKEEWAETVFQRAYIEFDESLQRWRDLYRATARAIDLN
FKIENNPAASERERREAQQRHNEARKQRDLLLAGDSAFNSDFYTYRYMASQGFLPGYNFP
RLPLLAYLPARRGHIGRESFLSRPRFLALGEFGPYSLIYHEGSQYRVTKALLTITGKDQV
SDGSRLPTEVARLCPSCGYGHFRSQRDADRCISCGASLDGAQEVKNLYRIENVSTKRAER
ITANEEERVRQGYEMQTTLQFAEAESKLQMVTTVASDEQGPLLELQYGPAATVWRMNFGW
RRRKEKAIQGFMMHPVTGHWVGGVDDGNGESERESEPPPDKTPPQRIVPYVEDRRNILIV
RPHSLMGEVSAETLTTLQYALKRGIEAVYQLEESELMAEPLPTRDNRQSILFFEAAEGGA
GVLTRIATEPTAMATVAAKALEVMHFLPPTEGDRWQRELLVEELNHEGNPICEAGCYRCL
LSYYNQPDHSLIDRKDRDTGGLLLDVLCRLTRANTVQGSQGRTPEQHDAELSRTAGSSLE
TAWLAHVAENAYRKPDRGQHAIAAARACADFFYDDLHLAVFIDGPHHDGDAQKQNDAEIN
RRLDELGYLVVRFPKETAAWPGIFKKNSDLFGPGKTKTT
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atggacgtctttcagtttcgcgagcacatagtcgccgaatacgagcagttcactcgtagc
ttcacgcgcatccgagccgacgatattcgggactatgtcaatgagcaatacgccagccag
agatactggccagagccgctcattcaaatcaacccgaactttaagtccggtgggacagtt
gaggagttggtcgaagccgggcagctgagcgcccagtgcaccgacattttccgccttggc
aagtcgtcttcatcaggcggcgtttccttgccgctgcacaagcatcaagcggaagccata
agcctcgctgctgatggcgaaagctatgtgctgaccaccggtacaggctcaggcaaatct
cttagctatttcattcccatcgtcgacgcgtgtctcaaagcaaaggctacagacccgacg
cccaagactagggcaatcgtcatctatccgatgaacgctttggccaactcgcagttggag
gaactgaagaaatttttgggttcgaatcctgcggaacgcgccgtgactttcggtcggtac
actggccaagagtccgatgaggagcggcaagcgatggcggccaatccgccggacattctg
ctgaccaacttcatgatgcttgagctgctaatgacccggcagagcgatatcgacaaggcg
gtcatgcgcaacgcaaagggcttgcgctttctagtgttggacgagcttcacacctaccgg
gggcgacaaggtgcggacgtggccttgctggttcgccgtgtgcgcgaagccttggccgag
aaccttgtctgcattggcacctcggccacgatggccaccgaaggcacccaaatggcgaga
aacgccgttgtggcagatgttgcttcaaggctgttcggtacgcgcatttatgaccgtaat
atcatcaccgagacgcttcgccgtaccacgcctgaagaagagactgtagcgacggtcgca
actctccttcgcgacgccgttcgtgcgggcgttcccgagacggctgactttgcatcactg
gcatcccatccggtgtcggtctgggtggagctgactctcggcctgacctatgagggtgac
aagcccagacgtgcacgcccacggacattggcgaaggccgccgagttgctgaatgagaca
tcaggagaaccagtcgacgcctgccgggactatctgcggaaattcatgttgcttgcctac
gctgtccaggacgaggccggcaaatcgctgttcgccttcaagcttcatcaattcattgct
ggcggcggcaaagtctatgcgacgttggaagctccgcgtcatcgcgccataacccttgac
ggtcagcagtatgtatccggcgatgatagtcgcgtccgtcgctactaccatgttcacttc
tgtcgagattgcggccaggagtatatgcccgtttgggacgccgagagtctggaagggcgc
acgtttgacgtgcgtggcattgaagagcggcagcacgacgacgacgaagtgaaatttggt
ttcctgcttcctggtttggagagctgggacccttctgacccggagcgataccctgagggc
tgggtggaggagcgtgcggatggcgagtggcgagttaagtcggacaaacgcaagttcatc
cctcaggcaatcaacgtgcgtcctgatggagtcgttacgaatggtccgggcatgaatgcc
tggttcattccgggggcctaccgtttttgtccggcgtgtggcactacccacacaacttct
ggcaaggatgttctgcggctgacgtccctttctggcgagggccgtagctcggccaccacg
atgctgactttgtcagcattgcggtacctctatgagcaagaccagcagttggacttcgag
gcgaagaaggttttggggttttccgacaaccggcaagacgcggcattgcaggcggggcac
ttcaatgacttcttgcaagtgctcctgacacgttccgcattgctctcagcggtcgaaaag
tccccgtcgaaggtgttgagcgagaaggaagtcgccaatgctgttttcgaagccttgggc
ttccaccgtgacgaccttggcgtacgcgctgagtatatgcagcagccagaagtcaagggc
aatacaagacgccaagtgcaggaggcgatgcgcggtatcttgggctaccgcagctacttc
gaccttcgccgaggctggcgattcaacaaccccaacctcgaacagttggggctggttcgc
atcgactaccaggacatcgacgacctcgctgccgatgacgatgaatgggctgatgcacca
caagtgttgcaagccgctcgccccgcggagcgcgccattgtgctgagagcgctgttcgac
ttcatgaggcaggggctgtgtattgcgacgcggtatttagaccgtaccgaactggagcag
ttgcgcactcagagctacgccaatctctgtgagccttggggcttcaccgaggacgagcgc
ccgcagccggccaagtggttcgtcacggctcgaccgcgcgaagagacggaccgcaaaggg
cggcgtttagacctcgatgactttctcgtcatcggctccagccgctcccgccttggcagg
gaacttcggaaaggcagcacctggggtggagcaaacccgtattacaggcaaatcaacgac
cacacttatccggaggtcctcactgcgttattgcgagccgctgagtcctacggtctggta
cgcaaggaagaaaccgatgtcgggctgaccggttggcagttgaatggggccgctcttgtt
tggacggtggggtcaggtcaaagcgcccgccaagctgacgacaacatctttttccgaggc
ctgtatcagaacatcgccgcgctgctggagagtccggttcaccagttgtttgattttgag
gcccgcgaacacacagctcaggtcgagcaggaagaccggttggaacgggaggcgcggttt
cgcttcacggagaaggacaagaccgaatggcaaactaagaatggcacggcattggagtgg
ttgccggtcttgttctgctcgccgaccatggagctgggtgtcgacatttcttcactgaac
accgtttacatgcggaatgtgccacctaccccggcaaactatgcccagcgcagcggccgt
gcaggtagagcaggacaaccagcgttagttattacctactgcgcggcgcagagcccgcat
gaccagtattacttccgtgacccggtccgcatggttcacggccaggtcaatgcacctacc
cttgacctagccaatcgcgagcttatcaagagccacatgcacgccatctggctcgcagag
acaggcaagaagctcggcaacagcgtacgcgacctgctggacatgaatcagccggagaag
ctacccatcacaatggagatggcgttcgacctggacaagccggaggcgaagctgagtgct
cacaagcgcggcctcaaggtgctgggcatgctgaaggacgagctgacgtcacaaaaggca
ccatggttcaaggaggaatgggccgagactgttttccagcgcgcatacatcgagttcgat
gagtcgctgcaacgctggcgagacctctatcgggccacagcccgggccatcgacctgaac
ttcaagattgagaacaaccctgcggcaagcgaacgcgaacggcgtgaagctcagcagcgg
cacaatgaggcgcgcaaacagcgcgacctgctgctggccggcgacagcgctttcaatagc
gatttctacacttaccgctacatggccagccaaggcttcttgccaggctataactttccg
cgcctcccgctgttggcttacctgccggcgcgccgtggtcacatcgggcgcgagagcttt
ctgtcccgccctcgcttcctcgcgcttggagaatttgggccctacagtcttatctatcac
gagggcagtcaatatcgagtgaccaaggcgttgttgactatcaccggtaaggaccaagtc
agcgacggctcgcgcctacctacagaagtagctcggctatgtccatcgtgtggctacggt
cacttccggtctcagcgcgatgccgaccgctgcatttcctgcggggcatcgctagacggc
gcgcaagaggtcaagaacctctatcgaatcgaaaatgtatccacgaagcgtgcagagcgc
attacagcaaacgaagaagagcgcgtccgccaaggctacgagatgcaaaccacgctgcag
tttgctgaggctgagagcaagctgcagatggtcaccacggtcgcgagtgacgagcagggg
cctttgctcgagctgcaatatggacctgccgctacggtatggcgcatgaacttcggttgg
cgccgacgcaaggaaaaagccatccaaggcttcatgatgcaccccgtcactggtcattgg
gtcggcggtgtggacgatggcaatggtgagtctgaaagagaatcggagccccccccggac
aagacgcccccgcagcgtattgttccttatgtcgaagaccggaggaacatccttatcgtt
cgcccgcattccctcatgggagaggtttcagctgaaacgctgaccacgctgcagtacgcg
ctcaaacgtggcatcgaagcggtttatcaactggaagaaagcgagttaatggccgagccc
ttgccaacccgcgacaataggcagtccattctcttcttcgaggcggccgaaggcggcgct
ggcgtgctgacacgaatcgctacggaaccgaccgccatggcgaccgtagctgcaaaggcc
ttggaggtgatgcactttcttccacccacggaaggcgaccgttggcaacgggagttacta
gttgaagaactgaaccacgaaggcaacccgatttgcgaggcgggttgctaccgctgtctg
ctgtcatattacaaccagccggaccactcgctaatcgaccgcaaggacagggatactggc
ggcttgttgcttgacgtcctctgccgcctgacacgggccaatacggtacaaggctcgcaa
ggtcgtacgccggagcagcatgacgctgaactatcacgcacggcaggcagcagcttggag
acggcttggctagctcatgtcgctgagaacgcttatcgcaagccggaccgcggccaacac
gccatcgccgctgcacgggcttgtgcggattttttttacgacgacctccatctggcagtc
ttcatcgacggtccccaccacgatggtgacgcgcagaagcagaacgacgccgaaatcaat
cgcaggcttgatgaattgggctacttggttgtgcggttcccaaaagagactgctgcctgg
cctggcattttcaagaaaaactcggacctgttcggtcctggcaagacgaagacaacatga
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