Caballeronia sp. NK8: NK8_32000
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Entry
NK8_32000 CDS
T09553
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
cabk
Caballeronia sp. NK8
Pathway
cabk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cabk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NK8_32000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cabk03400
]
NK8_32000
Enzymes [BR:
cabk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
NK8_32000
DNA repair and recombination proteins [BR:
cabk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
NK8_32000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
DUF4130
Motif
Other DBs
NCBI-ProteinID:
BCQ25023
LinkDB
All DBs
Position
2:complement(310303..311802)
Genome browser
AA seq
499 aa
AA seq
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MKSVTIDPSFAAWRTEARNLLTEGVRPEDVLWRESDASATVFGCIDPPPPGSVDPNARKP
VRVAREFLAMLETAACYRAPDRWPFLYKALWRWTQGDRAIASPDDADGHRLRQMIEMVEA
EEREMRKVLRFRHRDSSLGPPEFISWFEPVHDLLEHAALHFATRMGSATWMIATPHGAAF
WDGALLRVDRTSEPEEKPMDFGDTAMSGEAVSGDAIEALWLAYYESTFAPAQANAAEMAS
HMPVRYWKSPENARTDPALISRADPYSRRERHPRNVPPEMEVAINTDLEPIKGTLLTEPP
SLDACRRCALWRNATQAVPGVGPADARVMLVGEQPGDQEDRAGQPFVGPAGKLLDDALAE
AQIARASLYLTNAVKHFKWEAHGEERAHLAPAQREREACRYWLDEELKRVAPKVVVALGA
TALKALTGHRTALSEYLGKTIEHKGHIIVPTYHPSYLLRLADDHVRAEVFGTIVEALVFA
QQIADGTATIRTPVQNRAR
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcgtcaccatcgatccatcgtttgcggcctggcgtaccgaagcgcgcaatctc
ctgacggagggcgtgcggccggaggacgtgctgtggcgcgagtcggatgcctcggcgacg
gtgttcggctgcatcgatccgcctccgcccggttcggtggacccgaacgcgaggaagccg
gtcagggtcgcgcgcgaatttctcgccatgctggaaacggcggcgtgctatcgcgcgccg
gaccgctggccgtttctgtacaaggcgctgtggcgctggacgcagggcgaccgcgcgatc
gcgtcgccggatgacgcggacgggcatcggctgcgccagatgatcgaaatggtcgaggcc
gaggagcgcgaaatgcgcaaggtgctgcgtttcaggcatcgcgattcgtcgctcgggcca
cccgagttcatcagctggttcgagccggtgcacgacctgctggagcacgccgcgctgcac
ttcgccacgcgcatgggcagcgccacgtggatgatcgccacgccgcacggcgccgccttc
tgggacggcgcgctgctgcgcgtggatcgcacgagcgagccggaggaaaagccaatggac
ttcggcgataccgcaatgagcggcgaagcggtgagcggcgacgccatcgaggcgctctgg
ctcgcgtattacgagagcacgttcgcgccggcgcaggcgaacgccgccgaaatggcgtcg
cacatgccggtgcgctactggaaaagcccggagaacgcgcgcaccgaccccgcgctcatt
tcccgcgccgatccctattcgcggcgcgagcgccatccgcgcaatgtgccgcccgagatg
gaagtggccatcaacacggatctggagccgatcaagggcacgctgctcaccgaaccgccg
tcgctcgacgcgtgccggcgctgcgcgctctggcgcaacgcgacgcaggccgtgccgggc
gtcggtcccgccgatgcgcgcgtgatgctcgtcggcgagcagccgggcgatcaggaagac
cgcgcgggccagccgttcgtcggcccggcgggcaagctgctcgacgatgcgctcgccgaa
gcgcagatcgcgcgcgcatcgctgtatctgaccaacgcggtgaagcacttcaagtgggaa
gcgcacggcgaggaacgcgcacatctcgcacccgcgcagcgcgagcgcgaagcctgccgc
tactggctcgacgaagaactgaaacgcgtcgcgccgaaagtcgtcgtcgcgctcggagcg
acggcgctgaaggcgctcacggggcatcgcacggcgctgtccgagtatctcggcaagacc
atcgagcacaagggacacatcatcgtgccgacttatcacccgtcgtatctgttgcgtctc
gccgacgaccacgtacgcgcggaagtcttcggaacgatcgtcgaggcgctggttttcgcg
cagcagatcgcggacggcaccgcgaccatccgcacgcccgtccagaatcgcgcgcgctaa
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