Caldithrix abyssi: Cabys_149
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Entry
Cabys_149 CDS
T04549
Name
(GenBank) Rad3-related DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
caby
Caldithrix abyssi
Pathway
caby03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Cabys_149
09124 Replication and repair
03420 Nucleotide excision repair
Cabys_149
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caby03021
]
Cabys_149
03036 Chromosome and associated proteins [BR:
caby03036
]
Cabys_149
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_149
Enzymes [BR:
caby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Cabys_149
Transcription machinery [BR:
caby03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Cabys_149
Chromosome and associated proteins [BR:
caby03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Cabys_149
DNA repair and recombination proteins [BR:
caby03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Cabys_149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
HBB
DEAD_2
DEAD
ResIII
PDDEXK_1
Helicase_C
PhoH
DUF883
RRF_GI
Motif
Other DBs
NCBI-ProteinID:
APF16900
UniProt:
H1XU08
LinkDB
All DBs
Position
complement(173192..175606)
Genome browser
AA seq
804 aa
AA seq
DB search
MAIRIENNDIYLAVRDLVHYPPDQPLISSFPLPQRGVLGQKAHRRVQESKQKHFGLFHRE
FTVNRAYAYRDFTFHIQGRIDGVYQLSDRMEIEEIKSVILRPAEFKRLQIERYPHFSEQL
LFYAYLLQDSFDGLEVQTFLILVNLINNQQRSFPIVYNRMQVERMLQVRFEEIVQRILDE
RQKLAERQALIRKIQFDLPEERPQQQMMMDEVRQALESGAHLMASAPTGTGKTAAALYPA
IRHAYLNNKKIFFITSKTTQQRIAVETVLPLIAQGLPLKAMVITASEKMCLNDVFFCHPS
FCPYIKDYNQRLLSSNLLPNLLANDFIDPAAISSAAAGAQLCPFEVSMDLLAHVDLIIGD
YNYVFDPAAQLRRLFMSKDFSDWILIIDEAHNLYERGMNYLSPQIERRKLAELIAFTAQQ
RARVYRDLTSGLKEFKSMLDQLQREGELNYEHQQYFLTQLDLKQLDEAFKQFEAAFIRYL
IYKIRAKKLIVDDPLEAIFYQLRRFVRVAHIEDRAFVAFFNAMNDGVLHIQCCDPSHYLG
EIIDRFHGVIAMSATLDPMEFYRNLLGFSAVRTRFLQLDSPFPLENRKLIIVPGISTRYK
DRLRNAPKIAEIIRNTISVKPGNYLVFFPSFEFLQLVNVFLNQIPGEKIIQKPGMKAKER
DETLDKLRAGQAPHLLMAVMGGIFSEGVDFSGNMAIGVIVIGPALPQVSFERELLRQYYE
ETYHMGEEYAYIYPGMNKVIQAVGRLIRSATDKGVVLLIGDRFADERFNLLLPDYWFRKE
DDVEITSDYLKALKNFWQKMDRAD
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggccattcgtattgaaaacaacgatatttacctggcggttcgcgatctggtgcattac
ccgccagatcaacctctaatttcttctttcccgctgccccagcgcggcgttttagggcaa
aaggcgcacagacgcgtgcaggaatccaaacaaaaacatttcggattgttccaccgtgaa
tttacggtaaatcgcgcatacgcctaccgcgacttcacctttcacattcaggggcgaatc
gacggcgtttaccagttgtccgaccgtatggaaatcgaagagattaagtcggtcatcctg
cggccggcagaatttaaacggttgcagatcgagcgctacccgcatttcagcgaacagctg
ctgttttacgcctacctgctgcaagattcctttgatgggctggaagttcaaactttttta
atcctggttaatttgatcaacaatcaacagcgctcgttccccattgtttacaatcgaatg
caggtagagcgcatgctgcaggtgcgttttgaagaaattgtacagcgcatcctggatgaa
cgccagaagctggccgaacgtcaggctttaatccgcaaaattcaattcgatctgccggaa
gaacgtcctcagcaacaaatgatgatggacgaagttcggcaggcgctggagtcgggcgcg
catttaatggcttccgcgcccacgggcacgggaaaaaccgccgcggcgctctatccggcc
attcgccacgcctatttgaacaataaaaagatcttttttatcacctccaaaacaacgcag
cagcgcatcgccgttgaaactgttctgccgcttattgcccagggcctgcctttaaaggcc
atggtcattaccgcttccgaaaagatgtgcttaaacgatgtttttttctgccatccgtct
ttttgtccttacattaaagattacaatcagcggcttctttccagcaatcttttgcccaat
ttgctggccaacgattttattgatccggcagcgatctcttcggcggcggccggggcgcaa
ctctgcccgtttgaagtcagcatggatttactggcgcatgtggatttgatcatcggcgat
tacaattacgttttcgatccggcggctcagttgcgtaggttgttcatgagcaaagatttt
tcggactggattttgatcatcgacgaagcgcacaacctgtacgagcggggcatgaactac
ctttctccgcagattgaacgccgcaaactggccgaattgatcgcctttaccgctcaacag
cgcgccagagtttaccgggatttaaccagcgggctgaaagaattcaaatccatgctcgat
caactgcagcgcgagggcgagctgaattacgagcatcagcagtattttttaacccagctc
gatcttaagcaattagacgaagcttttaaacaatttgaagcggctttcatccgctatttg
atctacaaaatccgcgcaaaaaaactgattgtggacgaccccctggaagcgattttctat
caactgcgccgtttcgtacgggtggctcatatcgaagaccgcgcttttgtcgcctttttc
aacgccatgaacgacggcgttctgcacatccagtgctgcgatccttcccactacctgggc
gagatcatcgaccgctttcatggcgtgatcgccatgtcggccaccctggatcccatggaa
ttctaccgaaacctgctgggtttttccgcggtgcgcacacgctttctgcagctcgattct
ccctttcctctggaaaaccgtaagctgattattgtaccgggcatctccacacgctataaa
gaccgcctgcgcaacgcgcctaaaatcgctgagatcatccgcaataccatctccgttaaa
ccgggcaactatctggtttttttccccagctttgaatttttacaactggttaatgtgttt
ttgaatcagataccgggcgaaaaaatcatccagaaaccgggcatgaaggcaaaagaacgc
gatgagacgctggataagttacgagccggccaagcgccccatctgcttatggccgtgatg
ggcggcatttttagcgaaggcgtagattttagcggcaacatggccattggcgtgattgta
atcggcccggccctcccccaggtgagctttgaacgcgagctcctgcgtcaatattacgaa
gaaacctaccacatgggcgaagaatacgcttacatttatccgggcatgaataaggttatt
caggccgtgggacgcctgattcgctctgcgacggacaaaggcgttgtgctgctcattggc
gatcgctttgccgacgagcgttttaatctgctgctgcccgattattggttccgcaaagaa
gacgatgtggaaattaccagcgactacctgaaggcccttaaaaatttctggcaaaaaatg
gatcgcgccgattaa
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