Caldithrix abyssi: Cabys_2003
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Entry
Cabys_2003 CDS
T04549
Symbol
rtcB
Name
(GenBank) rtcB tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
caby
Caldithrix abyssi
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caby03016
]
Cabys_2003 (rtcB)
Enzymes [BR:
caby01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cabys_2003 (rtcB)
Transfer RNA biogenesis [BR:
caby03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cabys_2003 (rtcB)
Prokaryotic type
tRNA splicing ligases
Cabys_2003 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APF18752
UniProt:
H1XTW4
LinkDB
All DBs
Position
complement(2395584..2397038)
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AA seq
484 aa
AA seq
DB search
MKNPKIPIKKIDENLYEIEPFGDMRVAGRVYASPEMMEGLLEEQAPLQQVINVAHLPGIE
KYSLAMPDIHWGYGFPIGGVAATDWQEGVISPGGVGYDINCGMRLATTSLREDEVKKRLD
KLIQELFKAIPTGVGSSHAIKKLSKNDLKKVAQEGVQWVIQQGYGKAEDLEVIEEKGRMP
FADFSAVSQRAIERGLDQLGTLGSGNHFLEVDVVDRIYDEQAAAALGLFEGQIVVLIHSG
SRGFGYQICDDYLKVMSKAAQKYHLDLPDRQLAAAPIQSPEGQDYFAAMSCAANFAWSNR
QVIMDLARRVFKHVFNISDANLQFNLVYDVSHNIAKKETHKVGDREKTVCVHRKGATRAL
APGHPLLPEKYRAVGQPVLIPGDMGRYSFVCIGTQKAMEETFGSTCHGAGRLLSRRQAKK
AGAGRNLIKELSARGIVVQARGKATVAEEMPEAYKDVQSVVNVMHQSGISLKVARLRPIG
VIKG
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatcctaaaatccctattaaaaagatcgacgaaaatttatacgagattgagcct
tttggagacatgcgcgttgcgggacgcgtttacgcctcgccggaaatgatggaaggtctt
ctggaagagcaggctcctttacaacaggttatcaatgtggcgcacctgcccggcattgaa
aaatattcgctggccatgcccgatattcactggggttacggttttcccattggcggcgtg
gcggctaccgactggcaggaaggtgtgatttcgccgggcggcgtgggctacgacattaat
tgcggcatgcgtctggccactaccagcctgagagaagatgaagtaaaaaaacggctggat
aaactaatccaggaattgtttaaagccattcccacgggagtcggctcttcgcacgccatt
aaaaagctctccaaaaacgatctaaaaaaagtggcgcaagaaggggtgcaatgggtcatt
cagcagggctacggcaaggcagaagacctggaagtcattgaagaaaaaggcagaatgccc
tttgccgatttctccgccgtaagccagcgcgccattgaacgcggattggatcaattaggc
accctgggttccggcaatcattttctggaggtggatgttgtagatcgaatttacgatgag
caagcagcagccgctttaggtttgtttgaaggacaaatcgttgttttgattcatagcggt
tcacgcggttttggttatcaaatctgcgacgattatttaaaggtgatgagcaaagccgcg
caaaaatatcatctggatttaccggatcgccagctggctgccgcgcccattcaaagtccg
gaaggccaggattattttgccgccatgtcctgtgccgccaatttcgcatggagcaatcgc
caggtgatcatggatctggcccgacgcgtttttaaacacgttttcaatatttctgacgcc
aatctgcaatttaaccttgtttacgatgtttcgcacaatattgccaaaaaggaaacacac
aaagttggcgaccgagaaaaaaccgtttgcgtccatcgcaagggcgcgaccagagcgctg
gcgccggggcatcctctgctgcctgaaaaatatcgcgccgtcggacaaccggtgttaatt
cccggcgatatgggacgctactcttttgtttgcatcggtacgcaaaaggcgatggaagag
actttcggcagcacctgtcatggagccggccgcctgctcagccgccgccaggctaaaaaa
gcaggcgctggacgcaatttaattaaagagctttcggcgcgcggaattgtggtacaggcc
agaggcaaggccacggtggccgaagagatgcccgaggcctacaaagacgtccagtcggtt
gtgaacgtgatgcaccagagcggcattagccttaaagtggcccgtttacgacccattggc
gtaattaaggggtag
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