Caldithrix abyssi: Cabys_2328
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Entry
Cabys_2328 CDS
T04549
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
caby
Caldithrix abyssi
Pathway
caby03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cabys_2328
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_2328
Enzymes [BR:
caby01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Cabys_2328
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Cabys_2328
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Cabys_2328
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
HscB_4_cys
zinc-ribbons_6
Motif
Other DBs
NCBI-ProteinID:
APF19077
UniProt:
H1XWB2
LinkDB
All DBs
Position
complement(2785510..2786328)
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AA seq
272 aa
AA seq
DB search
MPELPEVETVVRELRPLIVGKTIDRVEAIWQKTFVDQAGLSLSGQIIQKIDRRGKFIILV
LNRSYLIVHLRMTGRLSLSNGQGDLSDLPHLRCLIQFKDGSRLLFEDMRKFGRIYHVKEV
EEVLKNVGIDALDTHLTFEHFYDYLKNRKMGVKAFLMSQKWIAGLGNIYTDESLFLAKIH
PEQTCDQISPGQGRKLFTAVQEILHRAVENMGSTISDYRDAYGNPGRNQLYFKVYRRAGK
PCFACGALIEKKKVAGRGTHFCPQCQKLRGSK
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaggtagaaactgtcgtcagagagctgagaccgcttattgtgggc
aagaccattgacagggtggaagcaatctggcaaaaaacatttgtcgatcaggcaggcctt
tcgttgtccgggcagatcattcaaaaaattgatcggcgcggcaaatttatcattcttgta
ttaaatcgcagttacctcattgttcatttgcgaatgacgggccgcctttcattaagtaac
ggccagggcgatttaagcgatcttccgcaccttcgttgcctgatccagtttaaggatggc
agccgtctgttgttcgaagacatgcgcaaattcggaagaatttatcatgttaaggaagtt
gaagaggttttgaagaatgtgggtattgacgccctggatacgcatttgacttttgaacat
ttttacgattacctgaaaaacagaaaaatgggcgttaaggcctttttgatgtcgcaaaaa
tggattgccggtctgggcaatatttacaccgatgagagcctgtttctggctaaaatccat
ccagagcagacctgcgaccagatcagccctggccaggggcggaaactgtttacagcggtg
caggaaattttacacagagccgttgaaaatatgggcagcaccatttccgattatcgggat
gcgtatgggaatccgggcagaaatcagttgtattttaaagtttacaggcgagccggaaag
ccctgctttgcatgcggcgctttgattgaaaagaaaaaagtggcgggcagaggcacccat
ttttgtccgcagtgtcaaaaattgagggggagtaaatga
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