Caldithrix abyssi: Cabys_2372
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Entry
Cabys_2372 CDS
T04549
Name
(GenBank) DNA polymerase-3 subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
caby
Caldithrix abyssi
Pathway
caby03030
DNA replication
caby03430
Mismatch repair
caby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cabys_2372
03430 Mismatch repair
Cabys_2372
03440 Homologous recombination
Cabys_2372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caby03032
]
Cabys_2372
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_2372
Enzymes [BR:
caby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cabys_2372
DNA replication proteins [BR:
caby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cabys_2372
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cabys_2372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
CheR_N
Motif
Other DBs
NCBI-ProteinID:
APF19121
UniProt:
H1XWS3
LinkDB
All DBs
Position
2832608..2835802
Genome browser
AA seq
1064 aa
AA seq
DB search
MRTMNTFVHLHTHSYYSLLDGVPSPEELVIAAKKAGFKALALTDHNALYGAVTFYQVARD
YGLKPIIGAELTMNDGFPLLFLVQNETGYRNLCQLISIGRLRGGHGKFKLTYNDLKPLTE
GLIVLSGGHKGKIYHLLRKRQIDQALLEVQRLKNLFAKNFYLEMQHFSNQDLLVNLRLRD
IAAETKTELVATNDVHFNSANDWYLRRILHAIDANGTLEQVTTAGTSQQYLKSAKEMQAL
FKAFPTALANTQKIARQCAFEFQLGKPIFPSVEIPQGESSFSYLWKQCFAGANERYQPLT
PQVIKRLEFELETIHQLGFAEYFLIVKDIVDFCRREHIPCVGRGSAADSLVAYVLGITQV
DPIRHNLYFERFLNPQRSDPPDIDLDICWKNRDRVLKYVYDRFGHKRTAMICTFNTFQNR
SALRDVAKAYGLPEDEIAKITKYLPHRHIDQIEEAVNTLPELKELRYNLTMYEEIMRIAR
RIADFPRHLSIHPGGVIIAPDQITRHVPLEVAGKEIVIAQYDMYSIEKLGLVKMDLLGVR
SLSIITDCLKSIKERHGNDLQQLKAQLLLKKSAELSPLDLRTIPEDDPEVTAFIRSGRTM
GCFQLESPAMRGLLRKMQIESVDDVITAVALIRPGASGSGMKEVYIKRRAGLEKTAYVHP
SLEEPLKETYGVIIYQEQVLRVAHAVAGLSLGQADILRRAMTKSRTKKEFLAMRSSFIQG
ALNKGLNQKQAETVWRFLAQFVGYGFNKAHSATYGTIAYQTAFLKYYFPAEYMCAVLNNQ
GGFYRRAAYVEEVRRLGIPLLPPDVTQSQAEFTCEGDGIRVGLSTVFELSAHTVKRIIEE
RQKAPFKDLFDFLRRTRAGEKETRHLIKVGALNALLPNEPKLLLMNEIYFKNKKHVSLSA
FLSEDVGLAPYNRFQKIVNELELLDFAVTDHPLALCEDQIARIKPVSSLELERHKNKCVT
FVGWLVTMRRVQTKNKTMMKFITLEDREGLVEAVLFEKAYKKYGHLFKGYGPYVVKGRVQ
SRLPGEANLLVEEVEALPLEKKKLETNSNSSIKYEQIMFPYFQN
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgcgaaccatgaacacttttgtgcacctgcacacgcacagttattacagtttgttggac
ggcgtgccctcgcccgaggagctggtcatcgccgctaaaaaagccggttttaaagccctg
gccttaaccgaccacaacgccctgtacggcgcggttaccttttaccaggtcgccagagac
tacggcctgaaaccgatcattggcgcggagttgaccatgaacgacggctttcctctgctc
tttctggtgcaaaacgaaaccggttaccgcaatctgtgccagctcatttccatcggtcgt
ttgcgcggcgggcatggcaaattcaaattaacctacaacgaccttaaaccgctgactgag
ggcttgatcgtcctttccggcgggcacaagggaaaaatttaccacctgctccgcaaacgg
cagatcgatcaggccctgctggaggtgcagcgcttgaaaaatctgtttgctaaaaatttt
tacctggaaatgcagcatttttccaatcaggacctgctggtcaacctgcgcctgcgcgac
atcgccgctgaaactaaaaccgaactggtggccactaacgacgtacactttaattcagct
aacgactggtacctgcgccgtattctgcacgccatcgatgccaacggcacgctggagcag
gtgaccaccgccggcacctcgcaacagtatttgaaatcggctaaagaaatgcaggccctg
ttcaaggccttccccaccgccctggccaatacgcaaaaaatcgcccgacagtgcgccttt
gaatttcaactgggcaagcccatctttccttccgttgaaattccccaaggcgaaagcagt
ttttcctatttgtggaagcagtgctttgcgggcgccaacgaacgctaccagcccctgacg
ccgcaggtgatcaaacgtctggaatttgaactggaaaccatccatcaactgggctttgcc
gagtattttttaattgtgaaagacattgtggatttttgccggcgcgaacacattccctgt
gtgggacgcggatcggcagccgatagcctggtggcttacgtgttgggcattacccaggtg
gaccccatccgtcacaacctgtactttgaacgctttctcaatccccagcgcagcgatccg
ccggatatcgacttagacatctgctggaagaaccgcgaccgcgtgctcaaatatgtgtac
gaccgcttcggtcacaagcgcacggccatgatttgcacctttaacacctttcagaaccgt
tcggccctgcgcgatgtggccaaagcctacggcctgcccgaagacgagatcgccaaaatt
accaagtacctgccccaccggcacatcgatcagatcgaagaagcggtcaacaccctgccc
gagcttaaagaactgcgctacaacctgaccatgtacgaagagatcatgcgcattgcgcgg
cgcattgccgattttccgcgccatctgtccatccatcccggcggggtaatcatcgcgccg
gatcagatcacgcgccacgtgccgctggaggtcgccggtaaagagatcgtcattgcgcag
tacgacatgtattccattgaaaagctggggctggttaaaatggatttgctgggcgtgcgt
tccttaagcatcatcaccgattgcctgaaatcgattaaggaacggcacggcaacgacctg
cagcagcttaaggcgcaacttttgctcaaaaaaagcgccgagctttcaccgctggatttg
cgcaccattcccgaggacgatccggaggttaccgctttcattcgttccggccgcaccatg
ggctgttttcaactggagagtccggccatgcgcgggctgctgcgaaagatgcagatcgaa
agcgtggacgacgtaatcaccgcagtggcgctcattcgtcccggcgcctcgggcagcggc
atgaaagaggtgtacatcaaacggcgcgccggactggaaaaaaccgcctacgtgcatcct
tctctggaagaaccgttaaaagaaacctatggcgtgattatctaccaggaacaggtgctc
cgggtggcgcacgccgtggccgggttgtcgcttggtcaggccgatattttacggcgcgct
atgaccaagtcgcgcaccaaaaaagaatttttggccatgcgctcgtcctttattcagggc
gccctgaacaaaggactgaaccagaagcaggccgagacggtttggcgttttttagcgcaa
tttgtgggctacggctttaacaaggcacactcggccacttacggcaccatcgcctaccag
acggcttttctcaagtactatttcccggcagaatacatgtgcgccgtgctcaacaatcag
ggcggcttttaccgtcgggcagcctacgtggaagaggtgcggcgcctgggcattcccctg
ctgccgccggacgtgacgcagtcacaggccgaattcacctgcgagggcgacggcattcgc
gtcggcctttccaccgtattcgaactgagcgcgcacacggtgaagcgcatcatcgaagaa
cggcaaaaagcgccgtttaaggatttattcgactttttacgacgcacgcgcgccggcgaa
aaagaaacgcgtcatttgattaaggtcggcgccctgaatgccctgttgcctaacgagccc
aaactgcttttgatgaatgaaatttattttaagaacaaaaaacacgtttcgctcagcgcc
tttttaagcgaagacgtgggcctggcgccttacaatcgctttcagaaaattgtgaatgaa
ctggaactgctggactttgccgtaaccgaccacccgctcgccctttgcgaggatcagatt
gcccgaattaaaccggtgtcctccttggaactggaacggcacaaaaacaagtgcgtgacc
tttgtgggctggctggtgaccatgcgccgcgtgcaaaccaaaaacaaaaccatgatgaag
tttattaccctggaagaccgcgaaggattggtagaagccgtgttgtttgaaaaagcttac
aaaaagtacgggcacctgttcaaaggctacggaccttatgtggtaaaaggccgcgtacaa
tcacgattaccgggtgaagccaatttgctggtggaggaagtggaagctttgccattggaa
aagaaaaaattggaaacgaattcgaattcatcgattaaatatgagcaaatcatgttcccg
tattttcaaaattag
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