Caldithrix abyssi: Cabys_289
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Entry
Cabys_289 CDS
T04549
Name
(GenBank) ATP-dependent DNA helicase, RecQ-like
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
caby
Caldithrix abyssi
Pathway
caby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cabys_289
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caby03019
]
Cabys_289
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_289
Enzymes [BR:
caby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cabys_289
Messenger RNA biogenesis [BR:
caby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cabys_289
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cabys_289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Pribosyltran
RecQ_Zn_bind
Cas3-like_C_2
SWI2_SNF2
Hydant_A_N
Motif
Other DBs
NCBI-ProteinID:
APF17040
UniProt:
H1XR40
LinkDB
All DBs
Position
326392..328488
Genome browser
AA seq
698 aa
AA seq
DB search
MDQNTAERLLKIAVGNAAARFREGQWEAIDALVNQRRKLLVVQRTGWGKSLVYFISTRIL
RDRGGGPTIIISPLLALMRNQIEAAERIGIRAQTINSTNTKEWKEITEQVLDDQIDAILI
SPERLANESFLETLLLPIAERVGLLVVDEAHCISDWGHDFRPDYKRLVNVLRHLPPNLPL
LGTTATANDRVIEDVRRQLGDIDVIRGPLMRKSLALQTGRLTDQAERLAWLAEQLPQLPG
TGIVYVLTIRDAERVANWLKQQGIKAAAYYSGVEDENFEDSHSYRLFLEEQFLSNRIKAL
VATSALGMGYDKPDVSFVIHYQAPASVISYYQQVGRAGRAIPLAHGVLLSGREDEEIHEY
FRQTAFPPAHHVHAILNALEQSDGLSIRQLEAQINLRSSQIEKALKVLSVENPSPVFKDG
SKWKRTAVDYRMNHEMIARLTAQREREWREIQQYIDSDRCLMVHLARALDDPYAEECGRC
ANCVGKPVVEMKTSEPLIIKAKRFLRHSEIIFKPRRQVAKGAFVQYGFRGNFPEELRAEE
GRILSRWGDAGWGRIVAENKHNGYFNDELVEAVKEMIEQRWRPDPQPQWVACIPSQRHPE
LVPDFARRLARSLKLPFVECIIKVAENEPQKLQQNRFYQCRNLDGVFEINDQVLDTPVLL
VDDIIDSGWTMTVAAALLRQAGSGLVYPLALASTSAND
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaacacggccgaacggcttttaaaaatcgccgttggcaacgccgctgcccgt
ttcagggaaggtcagtgggaagccatcgatgcgctggtcaatcagcgtcgtaagctgtta
gttgttcaacgaacgggctggggaaaaagcctggtttattttatcagtacgcgtattttg
cgtgaccggggaggcggacccaccatcattatctctcctctattggctctgatgcgcaat
caaattgaagcggccgagcgcattggcattcgggcgcaaaccattaattccaccaacacg
aaagaatggaaggaaattacagagcaggttcttgacgatcaaatcgacgccattctcatt
tcacctgaaaggctggccaacgaatcatttttggaaacgttgctattgcccatagccgaa
agagtgggcctgttggtggtggatgaagcgcattgtatttctgactgggggcatgatttc
cgccctgattataaacggctggtcaatgtactgcgtcacctgcctcccaatttgcccttg
ctgggaacgaccgccacagccaacgaccgtgtgattgaggatgtacgtcgccagctggga
gatattgatgtgatacgggggcccttgatgcgcaagagtctggcgctgcaaaccggcaga
ttaaccgatcaggccgaacgcctggcctggctggccgagcagctgccgcagttgcccgga
acggggattgtttatgtactgaccattcgggatgcggaacgcgtggccaactggttgaag
cagcagggaataaaggctgcggcttattacagcggcgtggaagatgagaattttgaggac
agccattcgtaccgcttatttctggaagaacaatttttatcaaaccgcatcaaagcgttg
gtggcaacctccgcccttggcatgggatacgacaaaccggatgtcagttttgtcattcat
tatcaggcgccggcttcggttatcagttattatcaacaggtgggacgcgccgggcgcgcc
attccccttgcccatggcgtgttgctttccgggcgggaagatgaagaaatccatgaatat
tttcggcaaacggcctttccgccggcgcatcatgtgcatgccattctcaatgccctggaa
cagagcgacggattgtccattcgccagcttgaggcgcaaattaacttgcgtagctcgcag
atcgaaaaggcgctcaaagtgctcagcgttgaaaatccctcaccggtatttaaggacggc
agtaagtggaaacgtacggctgtggactacaggatgaatcatgaaatgatcgcccgctta
acagcgcaacgcgaacgggaatggcgggaaattcagcagtacatcgatagcgataggtgt
ctgatggttcatctggcaagggcgctggacgatccgtacgccgaagagtgcggccgctgc
gccaattgtgtcggaaagcctgtggtggaaatgaaaaccagcgagccgctaattattaag
gcaaaacgctttttacgacattccgaaattatttttaagccccggcggcaggtggccaag
ggcgcttttgtgcaatatggattccgcgggaattttccggaagaattgcgggctgaagaa
ggccgaattctctcgcgctggggagacgcgggctggggaagaatagttgcagaaaataaa
cataatggctattttaatgatgaattggtggaagcggttaaagaaatgattgaacaacgc
tggagacccgatccacagccgcagtgggttgcctgtatcccttctcaaaggcatcctgaa
ctggtgcccgactttgccagacggctggccagaagcctgaagctcccttttgtggaatgt
attataaaagtagcggagaatgagccgcaaaaattgcagcaaaaccgtttttatcaatgt
cggaatcttgacggtgtttttgagattaacgaccaggttttggatacgccggtgttactg
gttgacgacataatcgattccggatggacgatgacggtagccgccgctctgttgcgtcaa
gccggtagcggattggtctatccgctggcgttagcttccaccagcgccaatgattaa
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