Caldithrix abyssi: Cabys_3270
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Entry
Cabys_3270 CDS
T04549
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
caby
Caldithrix abyssi
Pathway
caby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cabys_3270 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caby03019
]
Cabys_3270 (deaD)
03009 Ribosome biogenesis [BR:
caby03009
]
Cabys_3270 (deaD)
Enzymes [BR:
caby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Cabys_3270 (deaD)
Messenger RNA biogenesis [BR:
caby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cabys_3270 (deaD)
Ribosome biogenesis [BR:
caby03009
]
Prokaryotic type
rRNA helicases
Cabys_3270 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_22
Laman-like_dom
Motif
Other DBs
NCBI-ProteinID:
APF20018
UniProt:
H1XR03
LinkDB
All DBs
Position
3891265..3892848
Genome browser
AA seq
527 aa
AA seq
DB search
MNNNMTFSDFALSTHVLEAIDRKGFEKPTDIQALTIPMMLDNDANLIAQAQTGTGKTAAF
GLPLIEKIDPSTRSVQALILVPTRELAIQVADEIDSLKGEKDLKIVPIYGGQSIETQLRK
LKQGIHIVVGTPGRVIDHINRKTLKLDRIEQLILDEADEMLNMGFIEDMEEIMRHTNPDK
RTLLFSATIPPRIKDLARKYMDGYEMITAKKEQLMPSLTEQIFYEVRVSEKFRALCRIID
FEDHFYGLIFCKTRKDAASLAEDLLERGYSAEAIHGEISQGQRERSLNRFKSRKVNILVA
TDVAARGIDVNDISHVINYALPQDPESYVHRIGRTGRAGKQGVAVTFVTPGETRKFQFIQ
QIAGRKIMKARLPRAQDIINAKRNKISEQLKNISEGKIDKHYLEWAQELLKDNDPAEVLA
AVLQFSFQKELNPKNFADVADPDRPRTKSKKNGNARLFIALGRTDQLTPKKLVKLITSKS
DIKARQISDVKVKDNFSFITVPFDRAMKIISSFKDNGSRSLVTFAKD
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaacatgacattcagtgattttgccctttcaacgcacgtcttagaggcaatc
gaccgcaaaggctttgaaaaaccgaccgacattcaggcccttaccattcccatgatgctg
gacaacgacgctaatttaatcgcccaggctcaaaccggcaccggtaaaaccgcagccttt
ggtttgcctttgattgaaaaaatagatccttccacccgatcagttcaggctctgattctt
gtgcccacgcgcgagctggccattcaggtggccgatgaaatcgattcgcttaaaggcgaa
aaagacctgaaaatcgtgccgatttacggcgggcaatccatcgaaacccagttacgaaaa
ctgaaacagggaattcacattgtggtaggcacgcctggccgcgtcatcgatcacatcaat
cgtaaaacacttaaactggatcgcatcgaacagttgattctcgacgaagccgacgaaatg
ctcaacatgggctttatcgaagacatggaagagatcatgcgacacaccaatcctgacaaa
agaacgctgcttttttcggctaccattccgccgcgcattaaagacctggcgcgaaagtac
atggatggctacgaaatgattacagccaaaaaagaacaactgatgcccagcttaaccgaa
caaattttttatgaagttcgcgtgtcggaaaagttccgcgctctctgccgcatcatcgat
ttcgaagaccatttttacggtctgatcttttgcaaaacacgcaaagacgcggcatcgtta
gccgaagacctgctggaacgcggttacagcgcagaagccatccacggcgaaatttctcag
ggacagcgagaacgcagcctgaatcgttttaaaagccgcaaggtcaacattctggtggcc
accgatgtggcagcccgaggcatcgatgtaaacgatatcagccatgtgatcaactacgcc
ctgccccaggatccggaatcgtatgtgcaccgcattggccgaacgggacgcgccggaaaa
cagggcgtggccgttacctttgtgacgcccggcgaaaccagaaaatttcaatttattcaa
caaatcgccggcagaaaaatcatgaaagcacgtctgcccagagcgcaggacatcatcaat
gccaaacgcaataaaattagcgaacaactcaaaaatatctccgaaggcaaaatcgataag
cactatctggaatgggctcaagaattattaaaagataacgatccggccgaggtgctggcc
gccgttttacagttcagttttcaaaaagaactgaatcctaaaaactttgcagacgtggcc
gacccggacagacccagaacaaagagcaaaaaaaatggcaacgctcgccttttcatcgca
ctgggcagaacggatcagttaacgcctaaaaaactggtcaaactgattaccagcaaatcg
gacattaaggcccggcaaatcagcgatgttaaagtgaaagataatttttcattcatcact
gttccttttgaccgtgcgatgaaaatcatcagcagttttaaagataacggcagccgttcg
ctggtaacctttgccaaagattga
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