Caldithrix abyssi: Cabys_3271
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Entry
Cabys_3271 CDS
T04549
Name
(GenBank) DNA polymerase III, tau subunit
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
caby
Caldithrix abyssi
Pathway
caby03030
DNA replication
caby03430
Mismatch repair
caby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cabys_3271
03430 Mismatch repair
Cabys_3271
03440 Homologous recombination
Cabys_3271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
caby03032
]
Cabys_3271
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_3271
Enzymes [BR:
caby01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cabys_3271
DNA replication proteins [BR:
caby03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cabys_3271
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cabys_3271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
DNA_pol3_gamma3
RuvB_N
AAA_22
RCF1-5-like_lid
AAA_5
AAA_30
AAA_16
AAA_14
AAA_7
TIP49
AAA_19
Mg_chelatase
AAA_24
AAA_18
nSTAND3
AAA_2
TsaE
RNA_helicase
Rep_trans
AAA_28
Motif
Other DBs
NCBI-ProteinID:
APF20019
UniProt:
H1XR04
LinkDB
All DBs
Position
3893434..3895002
Genome browser
AA seq
522 aa
AA seq
DB search
MSYVVIARRYRPQTFEEVIGQEHVSKTLANAIANGRIAHAYIFSGPRGVGKTTTARILAK
AVNCEKGPTPTPCNACPSCQAITKGNALDVYEIDGASNRGIDEIRNLREKIRFAPSMGKY
RVYIIDEVHMLTKEAFNALLKTLEEPPEHVIFIFATTEIHRVPPTILSRCQRFDFRRMPI
KTIMEHLRKICDSENIKVEEEALLQIAKKADGSMRDSQSILDQLISFSGNEIKFEDVAKA
LGVIHQDEFFHLTDYIRNSDIKNIILTANKIFQTGYDLNEFLLGLEEHFRNILVLKATNS
PDLLDTSEVYLERYRELAKEISENDLIGYLKTIGETINAVKASQQPQLKFELGLVKLAKL
PKTTEIEQILENLNLLKKKASNNIASDHQPAYSASSQTPPTLDLTTIQNKWKQYVERISA
QRPSLSSVLEKAVLKHFNDGKLTVSLGKEGAIISNQRYWLENQLSELLQSSIRFEIQVKK
EEAQQAVAAEQSNATKEEIMKQILSKSDHLRKLADEFDLEIM
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgtcttacgttgtcattgcgcgtcgttatcgtccgcaaaccttcgaagaagtaattggt
caggagcatgtttctaaaactctggctaatgccattgccaatggacgaatcgcccatgct
tacatcttttccggcccgcgcggcgtgggtaaaaccaccaccgcccgtatcctggccaaa
gccgtcaactgcgaaaagggcccaacgcccaccccttgcaatgcctgtccatcctgccag
gccatcaccaaaggcaacgcgctcgatgtttacgagatcgacggcgcttccaatcgtggc
atcgatgaaatccgcaacctgcgcgaaaaaatccgctttgccccctccatgggcaaatac
cgcgtgtacatcatcgacgaagtacacatgctcactaaagaggcttttaacgcccttcta
aaaacactggaagaaccgcccgaacacgtcatcttcatttttgccacaactgaaatccac
cgcgtaccgccgaccattctttcccgttgtcaacgattcgacttcagaagaatgcccatt
aaaaccattatggaacacctgcgcaaaatttgtgattcagaaaacataaaggtcgaagag
gaagcgctgctgcaaattgctaaaaaggccgatggttccatgcgtgattcgcaaagtatt
ctggaccagcttatctccttttccggcaacgaaataaaatttgaagatgtggctaaggcc
ctgggcgtcatccatcaggacgaatttttccatttgacggattacattcgaaatagcgat
attaaaaacattattttaaccgccaataaaatcttccagaccggttacgatttaaacgaa
ttccttttaggactggaagaacatttcagaaacatccttgtattaaaagccaccaactcc
ccggaccttttagatacttctgaagtttacctggaacgctatcgtgagctggccaaagaa
atttccgagaacgacctcatcggttatttaaaaaccatcggcgagacgattaatgccgtt
aaagcgagccaacagcctcaattaaaatttgaactggggctggtaaagctggctaaattg
ccaaaaacgacagaaatcgaacaaattttagaaaacctaaatctgctaaaaaaaaaagcc
agtaacaacatagcctctgaccatcaaccggcttacagcgcttcttcgcaaacaccgcca
acgcttgacttaactaccattcagaacaaatggaaacaatacgtcgaacggattagcgcc
caacggccttccctttcatcggttctggaaaaagcagtgctaaaacattttaatgacggc
aaattaaccgtctctctgggtaaagaaggagccattattagcaatcaacgctactggctg
gaaaatcagctttcggaactcctgcagtcttccattcgttttgaaattcaggtaaaaaag
gaagaagcgcaacaggccgtcgcggccgaacaaagcaacgcgactaaagaagaaattatg
aaacaaatcctttccaaatccgatcatctacgcaaattggcggatgaatttgatctggaa
ataatgtaa
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