Caldithrix abyssi: Cabys_3454
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Entry
Cabys_3454 CDS
T04549
Name
(GenBank) rnc ribonuclease-3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
caby
Caldithrix abyssi
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
Cabys_3454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caby03019
]
Cabys_3454
03009 Ribosome biogenesis [BR:
caby03009
]
Cabys_3454
03036 Chromosome and associated proteins [BR:
caby03036
]
Cabys_3454
Enzymes [BR:
caby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
Cabys_3454
Messenger RNA biogenesis [BR:
caby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Cabys_3454
Ribosome biogenesis [BR:
caby03009
]
Eukaryotic type
90S particles
RNase
Cabys_3454
Prokaryotic type
rRNA processing factors
Cabys_3454
Chromosome and associated proteins [BR:
caby03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
Cabys_3454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
RM44_endonuclase
DSRM_2
DSRM_MRPL44
DSRM_CARF
Dicer_dsRBD
Motif
Other DBs
NCBI-ProteinID:
APF20200
UniProt:
H1XS94
LinkDB
All DBs
Position
complement(4100067..4100861)
Genome browser
AA seq
264 aa
AA seq
DB search
MIKRLLKRFVVRAKDDELPIPVTEIERKIDYQFKDKILLLKAFKHRSYLNMTHESALESN
ERLEFLGDAVLDLIIAEHLFHNFPNKNEGELSKKRSVLVSRQVLAQITEEIGLGEYLLLD
KGEEKTGGRKRLNNLANLFESVLGAIYLDGGLTAARNFVNHFILRKREDLLKVKRYHNYK
SELLEKAQSKGWGNPVYQIVHESGPDHNKQFVVRVNVNNRWLAKGVGSSKKKAEQLAARN
ALKKLGNNRNNSARTKTQKQRDMS
NT seq
795 nt
NT seq
+upstream
nt +downstream
nt
atgataaaaagactgctgaagcgatttgtagttcgagcaaaagatgacgaacttcctatt
cctgtgacggaaattgaacggaaaatagattatcaatttaaagataaaatcctactgtta
aaagcatttaagcaccgttcatatctcaatatgactcatgagagcgcccttgaatctaac
gaacggttggagtttttaggcgacgctgttctggatttgatcattgccgagcatttgttt
cataattttccgaataaaaatgagggcgagctctctaaaaagcgttctgtgcttgtttcc
agacaggtgttggctcagattaccgaagaaattggcctgggtgaatatttgcttctggat
aaaggcgaagaaaaaaccggaggccggaaacggcttaacaatcttgccaatttgttcgaa
tcggttctgggcgccatttacctggatggcggcctgacggcggcgcgcaattttgtaaac
catttcatcctcagaaaacgtgaagatttattgaaagtcaaacgttatcataattacaaa
tctgaattgctggaaaaagcgcagagtaaggggtggggcaatcccgtctatcaaattgta
catgagagcggcccggatcataataaacaatttgtggtgcgagtaaacgtcaataatcgc
tggctggccaaaggagtcggctccagcaaaaagaaggccgaacaactggccgcgcgcaat
gcgctaaaaaaattaggaaacaatcgtaataattctgccagaacaaaaactcaaaaacaa
agggatatgtcttga
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