Caldithrix abyssi: Cabys_3938
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Entry
Cabys_3938 CDS
T04549
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
caby
Caldithrix abyssi
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
caby03016
]
Cabys_3938
Enzymes [BR:
caby01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Cabys_3938
Transfer RNA biogenesis [BR:
caby03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Cabys_3938
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
DGCcoil
NYD-SP28
Motif
Other DBs
NCBI-ProteinID:
APF20683
UniProt:
H1XX79
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All DBs
Position
4670352..4670984
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AA seq
210 aa
AA seq
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MSVGAESLKKRNYKTDKQQGKIMETIRSFVAIELPADLKKQIDQYQRQLKPLCRHTRWVN
SKGLHITLKFLGEQEPDLIDRVQQNLFHVQGAVKPFRLTVKNFGAFPGKRSPRVLWLGVV
SQPLEAVHDLFQFIEENLHGLGFVKEKRRFSPHLTLARVKQPGRFDPLWEYVQKHPFEPY
TFEVNKIVLMRSILKPQGAEYRPIATYSLR
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttggcgctgaaagccttaaaaaaagaaactataaaaccgataaacaacagggc
aaaatcatggaaaccattcgcagttttgtggccatcgaattaccagcggatttaaaaaaa
caaatcgatcaatatcaacggcaattaaaaccgctgtgtcggcacacgcgctgggtaaac
agcaaagggctgcatattacgctcaagtttttaggcgaacaggagccggacttgattgac
cgcgtacagcagaatctgtttcatgtgcagggcgcggtaaagccctttcggctcaccgtt
aaaaatttcggcgcctttccgggcaaacgcagcccgcgcgtcctgtggctgggcgttgtc
agccagccgctcgaagcggttcacgatttgtttcaattcatcgaagagaatttacacggc
ctgggttttgttaaagaaaaaagacgtttttcgcctcacctgacactggcgcgcgttaaa
cagcccgggcgttttgatcccctgtgggaatacgtacaaaaacacccctttgaaccttac
acttttgaagtaaacaaaatcgttttaatgcgcagcatcttaaaaccgcagggcgccgaa
taccgtcccattgccacgtattctctgcgctaa
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