Caldithrix abyssi: Cabys_687
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Entry
Cabys_687 CDS
T04549
Symbol
rho
Name
(GenBank) rho transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
caby
Caldithrix abyssi
Pathway
caby03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cabys_687 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
caby03021
]
Cabys_687 (rho)
03019 Messenger RNA biogenesis [BR:
caby03019
]
Cabys_687 (rho)
Transcription machinery [BR:
caby03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Cabys_687 (rho)
Messenger RNA biogenesis [BR:
caby03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Cabys_687 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_22
OB_RNB
ATPase_2
AAA_25
AAA
S1CSD-TOTE-2
Man-6-P_recep
DUF6115
Motif
Other DBs
NCBI-ProteinID:
APF17438
UniProt:
H1XU49
LinkDB
All DBs
Position
796308..797558
Genome browser
AA seq
416 aa
AA seq
DB search
MLDIEELKKKKITELTKIAQDMNITGISGLKKSELIYRILEEQTAQEGLIFSKGVLEILP
DGYGFLRSSDYSYLPGPDDIYVSPSQIKRFGLRTGDTITGQIRPPKDNERFFALLRVEAV
NDESPEKARERNLFENLTPLYPMERLNLETSSKDYSMRIMNLLTPIGKGQRGLIVAQPRT
GKTILLQKIANSITKNHPEVVLMVLLIDERPEEVTDMERSVDAEVISSTFDEPAERHVQV
ADMVLEKAKRLVEYKRDVVILLDSITRLARAHNTVVPHSGKILSGGIDSNALQKPKRFFG
SARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELMLDRRLTDRRIFPSIDINR
SGTRKEELLLSREELARVWILRKLLNEMNPIEAMEFLLEKMSETKNNREFLRMMNS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atgttggatattgaagaactcaaaaagaaaaaaattaccgagctgaccaaaattgctcag
gatatgaacattaccggtatttccggtttaaagaaatcagagctaatatatcgtatttta
gaagaacaaaccgcgcaggaaggtttgattttttccaaaggcgtgctggaaattttgcct
gatggttacggctttttgcgctcgtccgattactcctaccttccaggtccggacgatatt
tatgtctcgccatcgcaaattaagcgctttggtttgcgcaccggcgataccattacagga
caaattcgccccccaaaagacaacgagcgcttttttgccctgctgcgcgtagaggccgta
aacgacgaaagcccggaaaaagcgcgcgaacggaacctgttcgaaaacctgacgccgctc
tatcccatggagcgtttgaatctcgaaacatccagcaaagactattccatgaggataatg
aaccttttaacgcccatcggcaaggggcagcgcggtttaattgtggcccagcccagaaca
ggtaaaaccattttgctgcaaaaaatcgccaattccattacaaaaaatcatcccgaagtg
gtgctaatggtgcttttaattgacgagcgcccggaagaagtaaccgatatggaacgttct
gtggacgccgaggtgattagctcaacttttgatgaaccggctgagcggcacgttcaggtg
gccgatatggtgctggaaaaggcaaagcgtctggtggaatacaaacgcgatgtggtcatt
ttgctggatagtattacgcgtctggcgcgggcgcacaacacggttgtgccgcatagcggt
aaaattttgtccggcggtattgattccaatgccctgcaaaaacccaagcgctttttcgga
tcggcgcgtaacgtggaagaaggcggcagtttgacgattattgccaccgcgctggtcgat
accggatcgcgaatggacgaggtcatctttgaagaatttaagggaacgggcaatatggag
ctgatgcttgatcgtcgcctgaccgatcgccgcatcttcccgtctatcgacatcaatcgt
tccggaacgcgtaaggaagaattgttgctcagccgcgaagagctggcgcgtgtctggatt
ttacgcaagttgctgaacgaaatgaatccgatcgaagccatggagttcttgctggaaaag
atgtctgagaccaaaaataacagggaatttttacgcatgatgaattcgtaa
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