Caldithrix abyssi: Cabys_72
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Entry
Cabys_72 CDS
T04549
Name
(GenBank) exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
caby
Caldithrix abyssi
Pathway
caby03410
Base excision repair
caby03430
Mismatch repair
caby03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Cabys_72
03430 Mismatch repair
Cabys_72
03440 Homologous recombination
Cabys_72
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_72
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Cabys_72
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Cabys_72
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cabys_72
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
tRNA_anti-codon
DUF7281
Motif
Other DBs
NCBI-ProteinID:
APF16823
UniProt:
H1XUM0
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All DBs
Position
complement(83073..84749)
Genome browser
AA seq
558 aa
AA seq
DB search
MQLPKNTWKILNTDPSRSIVEVILENRKLPTTHLASFRLSERMHDPYLLPDMEKGVKRIL
QAIERKEKIVVFGDYDVDGITSTALMLYFFRKINYPVDYLLPHRQKDGYGLRISTVDRIA
QMGARLVITVDNGISSAEAIDYARQKGIDVVVTDHHLPEGKMPDAVAVINPNRKDSDYPF
KSICGAVVAYKVIWALAQKLLPEADFKQFLLDQLDLITIGTIADVMPLRDENHALVKFGL
KVLSRTKKPGLIELKKVAGLNGKNITPISVGYFLAPRLNASGRMEEADTSVKLLIAQDKE
RASYLASYLNKLNQKRQNLQQDYLDNVISALPEDKKKLEKVIIVHDPQWHAGLIGLISGK
LKERYGRPAIAFTSDEDGNLVGSARSIEAFHITNALTKFNHYFLNYGGHHKAAGLTISPE
KFDAFREDFVQYANQVLTDDDLIPLLTIDSVVDIDQVHLNMAQTVEELGPFGEGNPQPVF
VFEKVNIREMYLMGNGKHLKLFVEKGNQTYECVWWNAAEYKDALQFGQPVDIAFKLSVNN
WQGRDRLQLVVEDIRPVK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
ttgcagctaccgaaaaatacatggaaaatattaaatacagacccatcgcgttccattgta
gaagttattttagaaaacagaaaattaccgaccacgcatctggcctctttccggctctcg
gaaagaatgcacgatccttatcttttacctgatatggaaaaaggggtaaaacgcattttg
caggccattgagcgcaaggaaaagattgtggtttttggcgactacgatgtggacggcatt
acttccaccgcgctgatgttgtattttttccgcaaaatcaattatcccgtcgattatctt
ttgccccatcgccagaaagacgggtacgggttgcgcattagcacggttgaccgcatcgct
caaatgggcgcccggctggtgattaccgtggataacggaatttcttccgcagaggcgatc
gactacgcccgacagaaaggtatcgacgttgtggtaaccgatcaccacctgccagaaggc
aaaatgccagatgccgttgccgttatcaatcccaatcgaaaagactcggattatcctttt
aaatccatttgcggcgccgttgtcgcttacaaggtcatctgggcgctggcgcaaaaactg
ctgccggaagccgattttaagcaatttttgttggaccaactggatctgattaccattggc
accatcgccgatgtgatgcccctgcgcgacgaaaaccatgcgctggtgaaatttggcctt
aaagtgctctcgcgtactaaaaaacccggcctaattgagctaaaaaaagtggcgggcctg
aacggcaaaaacattacgcctatttccgtcggctattttctggcgccgcgcctgaacgcc
tccggacggatggaagaagccgacacatccgtaaaactgctcattgctcaggacaaagag
cgggcatcttacctggcctcttatctcaacaagctcaatcaaaaacggcaaaacttgcag
caggattatctggacaacgtaatctccgccctgcctgaggacaaaaaaaagctggaaaaa
gtgattatcgttcacgacccccagtggcacgccggcctcatcggcctgatttccggaaaa
ctcaaagagcgttacggccggccggccatcgcctttaccagcgacgaagacggcaacctg
gttggctcggcgcgcagcatcgaggccttccatattaccaacgccttaaccaaatttaac
cattactttttaaactacggagggcaccacaaagccgccggtttgaccatctctccggaa
aaattcgatgccttccgtgaagattttgttcaatatgccaatcaggttttaacagatgac
gatttgattccgcttttgaccatcgattcggtggtggatattgaccaggtacatctaaac
atggcgcaaacggtggaagaactggggcccttcggcgaaggcaatccacagccggttttc
gtattcgaaaaggtcaatatcagagaaatgtatctgatgggtaatggcaagcatctaaaa
cttttcgttgaaaagggaaaccagacctacgaatgcgtctggtggaatgcagccgaatac
aaagacgccttacaattcggccaaccggttgatatcgccttcaaactcagcgttaacaac
tggcagggaagagatcgcctgcaactggttgtcgaagatattcgtccggtaaaatga
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