Caldithrix abyssi: Cabys_768
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Entry
Cabys_768 CDS
T04549
Name
(GenBank) DNA helicase-2 / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
caby
Caldithrix abyssi
Pathway
caby03420
Nucleotide excision repair
caby03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
caby00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cabys_768
03430 Mismatch repair
Cabys_768
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
caby03400
]
Cabys_768
Enzymes [BR:
caby01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cabys_768
DNA repair and recombination proteins [BR:
caby03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cabys_768
MMR (mismatch excision repair)
Other MMR factors
Cabys_768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
Cas_Cas4
UvrD_C_2
AAA_30
DUF3799
Dna2
Motif
Other DBs
NCBI-ProteinID:
APF17519
UniProt:
H1XUR6
LinkDB
All DBs
Position
888204..891032
Genome browser
AA seq
942 aa
AA seq
DB search
MEKLKQQFIETFELQDDLEKQKAIFETDGPTLIIAGPGTGKTYTLVLRTLFILLSKRARP
SEIILTSFTEKSALELRDRLGLFARRLGVKLDLHELVLGTIHSICDHYINQFIRNTPLSR
NYTVLDDLTNSLFIYEHWDEIGEPFRVGRRYFGRWISKWDSITRIKTYFDKITEEMVEPD
ELVQSSDDFLQMLGESYQKYRALLFENNKVDFAFQQRIFYDVLKKRKIGKQIRESVKYLL
IDEYQDTNYIQEQIALTLVKPHQNICVVGDEDQALYRFRGATVRNILEFPHHFKNVKIVK
LLDNYRSHQMIIDRYNAFIESVDWSNPDGGPDFRFDKKVRPAKSTASPDYPAVFTIWGEN
TREEARRFADLVQFLKKQKIIQDYSDVALLLHSVKLDYSEPFIQALQEKNIPAFCPRARA
YFENEEVKMALACYLIITGYLEEDIKQSRHADYFNEALKLLGPFVDTPLAAYLQRMATEI
QQLSGNETIDENVMDFLYQLFAYEPFYSYLKDENKARNLSIFSSLLNAFQTYYHLPIITA
KNKQALKYRLFNSFFNLLLETGLNEYEDQNDPIPKGYVQIMTIHQSKGLEFPVVVVSSLD
KRYSVQKQVDRLLRPFYRREPFEPEDRIHDFDWARLFYVAFSRPQKLLVLSTGTEPKDFF
RSIWEGLEQWPYVQKETLKAQQFKSRQPFVPKKTFSLTSHINVYETCPRQYQFYKDLEFT
PSRTGQLLFGTLVHQTIEDIHRAVLDGEQVNEPQIADDFERNYRGLIASGYRPLGKTQKE
QALKQVVTYFQNNKDLLARVVETEVDVSYEKEDYIISGKVDLLLGKDDRLELLDFKSQQK
PQKDDPIIEKYTYQLHVYAHILKERYGKEPERLYIYWTAEDHRKDALQEIPYDPRLEEAA
GHHFDHIAHRIIQKDYTLKNPPDKTKVCKECDFRYYCKIREV
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacttaaacagcagtttatagaaactttcgaattacaggatgatttagagaaa
cagaaagccatttttgaaacggacggtcctaccctgatcattgccgggccgggcaccggt
aaaacttataccttagttttgcggaccctctttattcttttatccaaaagagcgcggcct
tctgaaatcattttaacttcctttactgaaaaatcagctttagaattgcgcgaccggtta
ggactttttgcccgccgtttaggtgtgaagttggatttgcacgagctggtcctgggcaca
atccacagcatctgtgatcactacatcaatcaattcatccgaaacacaccgctatccaga
aattacaccgtgctggacgatctgaccaattcattgtttatttacgaacactgggatgaa
attggcgaaccgttccgggtaggccggcgatatttcggccgctggataagtaaatgggat
agtatcaccagaatcaaaacgtattttgataagattaccgaagaaatggtggagccggat
gaacttgtgcaaagcagcgatgattttttgcaaatgctgggggaatcctaccagaaatac
agagcgttacttttcgagaacaacaaagtcgattttgccttccagcagcgcattttttat
gatgtgttaaaaaaacgaaaaattggtaagcaaatacgggaatcggtgaaataccttctc
atcgacgaatatcaggataccaattacattcaggagcaaattgcgctgacgctggtaaag
ccccaccagaatatctgtgttgtgggagatgaagaccaggccctgtatcgcttccgcggt
gctacggtgcggaacatcctggaatttccccaccatttcaaaaatgtaaagatagtaaaa
ttgctggataattaccgttcgcaccaaatgattattgatcggtataatgcctttattgaa
tctgtggattggagtaatcccgatggtgggcctgattttcgttttgataaaaaagtacgt
ccggcaaaatcgacggcttcaccggattatccggcggtgtttaccatctggggagaaaat
acacgggaagaagcccggcgttttgccgacctggtgcaattcttgaaaaaacagaaaatt
attcaagattatagcgatgtggcgctcctattgcacagcgtcaaactggattatagcgag
cctttcatccaagctcttcaggaaaagaacattcctgccttctgcccccgggcccgggcc
tattttgaaaacgaagaggtgaagatggcgctggcctgttatctgatcattactggctat
ttagaagaggatattaaacaatcccggcatgcggattattttaacgaggcattaaaattg
ttgggaccgtttgttgatactcctttagcagcctatttacaacgaatggctaccgaaatc
cagcagctttctggcaatgaaacgatcgatgaaaatgtgatggactttctctatcaatta
ttcgcctatgagccattttattcctatctcaaagatgaaaataaagcccgtaatctatct
atattttcatctctgctgaatgcttttcaaacctattaccatttgcccattataacggct
aaaaataaacaggcgttaaaataccggcttttcaatagtttttttaatttgttgctggaa
acgggattgaacgaatatgaggaccagaatgatccgataccgaaaggttatgtgcagatt
atgaccattcaccagagtaaggggcttgagtttccggtggttgtggtgagttcgctggat
aaacgctactcggtgcagaaacaggtggatcggttgctgcgaccgttttacagacgtgaa
ccttttgagccagaggacaggattcacgatttcgattgggctcgactcttctatgtggcc
tttagccgtccacagaagttactggtattgagtactggaacagaaccaaaagatttcttc
cgctccatctgggagggactggagcaatggccctatgtacagaaagaaaccctgaaagcc
cagcagtttaaatcccgtcagccctttgtccccaaaaagaccttttcgctaacttcccat
atcaatgtatatgaaacctgtccgcggcagtatcaattttacaaagacctggaatttacc
cccagccgtaccggtcagttgctgttcgggacgctggtgcaccagaccattgaagatatt
caccgggcggtgctggatggggaacaggttaacgaaccccaaattgctgatgatttcgaa
cgcaactaccggggattgattgccagtggctatcgccccctaggcaagacccagaaggaa
caggcacttaaacaggtggtgacctattttcagaacaacaaggacctgttagcacgcgtg
gtggaaaccgaagtggatgtgagttacgaaaaagaagattatatcatcagcggaaaggtg
gatttattgctggggaaagatgatcggctggaactactggattttaaatcgcaacagaaa
ccgcaaaaggatgatcccattattgagaaatatacttatcaactgcatgtgtatgcccat
attttaaaggagcgttacggcaaagaaccggaacgcttatatatttactggacggcggaa
gaccaccgcaaagatgcgttgcaggaaatcccctacgatccgcgtctggaagaagccgcc
ggacaccattttgaccatatcgcacaccgtattattcagaaggattacaccttgaaaaat
ccaccggataaaacaaaggtgtgcaaagaatgtgattttcggtattattgtaaaataagg
gaagtgtga
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