KEGG   Caldithrix abyssi: Cabys_817
Entry
Cabys_817         CDS       T04549                                 
Name
(GenBank) ffh signal recognition particle subunit FFH/SRP54 (srp54)
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
caby  Caldithrix abyssi
Pathway
caby02024  Quorum sensing
caby03060  Protein export
caby03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:caby00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    Cabys_817
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Cabys_817
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Cabys_817
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:caby02044]
    Cabys_817
Enzymes [BR:caby01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     Cabys_817
Secretion system [BR:caby02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   Cabys_817
  Eukaryotic Sec-SRP protein
   Cabys_817
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N CbiA AAA_22 Zeta_toxin AAA_33 KTI12 KAP_NTPase APS_kinase ATP_bind_1 DO-GTPase1 CLP1_P AAA_16 TIP49 6PF2K AAA_24 AAA_14 AAA_31 cobW NACHT nSTAND3 AAA_18 AAA_30 AAA_5 MobB NPHP3_N ParA ATPase TsaE ResIII RNA_helicase Thymidylate_kin ArsA_ATPase Ribosomal_L10 AAA_28 IRF-3 HrpJ LMBR1 AAA ABC_tran
Other DBs
NCBI-ProteinID: APF17568
UniProt: H1XUW3
LinkDB
Position
942098..943423
AA seq 441 aa
MLEELTSKLESTFRRLRGYGKLTEKNIADSLKEIRRALLEADVNYKVVKDFVASVQKKAV
GEEVLRSVTPGQMIVKIVHDEMVRLLGGTTATLKTAGIPPTIIMLVGLQGSGKTTFAAKL
AKYLQKKNRKPLLVAADVYRPAAIQQLKILGRSINVPVYEEGIGDPVKIAFNAISYARQH
MLDTIILDTAGRLHIDEQMMEELVKIKKRIRPHEILFVADGMTGQDAVNTASQFAERLNF
DGVVLTKMDGDARGGAALSIKAITGKPIKFMGVGEKLEDIEQFHPDRMASRILGMGDVVT
LVEKAQETIDQEKAAKLEQKLRKAEFDLEDFLDQLQQIKKMGSLESILRMIPGVGSQLKN
AQVDEKNLVRVEAIINSMTKEERRNPKILNGSRRKRIAMGSGTRVQDVNQLMRQFEQMKK
MMKQMKNKSFRGFGGMPFGMG
NT seq 1326 nt   +upstreamnt  +downstreamnt
atgcttgaagaactaacttctaaactggaatcgacgtttcggcggttacgcggatacggg
aaattaacggaaaagaatattgccgattctttaaaagagattcggcgcgccctgttagag
gccgatgttaattacaaagtcgtcaaagattttgtagcgtcggtgcaaaagaaggccgtt
ggcgaagaggttttacgcagcgtaacgcccggtcagatgattgtgaaaatcgttcacgac
gaaatggtgcgtttgctgggcggcaccacggctaccctcaaaacggccggtattccgcca
accatcatcatgctggtgggtttacagggctccggcaaaaccacttttgccgccaagctg
gcaaagtatctgcaaaaaaagaatcgaaaaccgttgcttgtggcggcggatgtttatcgt
ccggcggccattcagcagcttaaaattttagggcgcagtattaacgtgccggtatatgag
gagggcattggcgatccggtgaaaatcgccttcaatgccatcagttatgcgcgtcaacac
atgctggataccatcatcctggatacggccggtcgtttgcacattgacgagcagatgatg
gaagagctggttaaaattaaaaaacgcattcgaccgcacgaaattttgtttgtggccgac
ggcatgaccggtcaggatgcggtgaacacggccagccaatttgccgagcgcttgaatttt
gacggcgtggtgctgaccaaaatggacggcgacgcgcgagggggcgccgcgctttcgatt
aaggccattaccggcaagcccatcaagtttatgggcgtgggcgaaaaattagaagatatt
gaacaattccatccggatcgcatggcttcccgtatcctgggcatgggcgacgtggtcacc
ctggtggaaaaggcccaggagacgatcgatcaggaaaaagcggccaaattagaacaaaaa
ttacgcaaggccgagtttgatctggaagattttctggatcagctgcagcagatcaaaaaa
atgggttctctggaatccattttgcgcatgattcccggcgtgggcagccagttgaaaaac
gcgcaggttgacgagaagaatctggtgcgcgttgaggcgatcatcaattctatgaccaaa
gaagagcggcgcaatcccaaaatattaaacggcagccgccgcaaacgaatcgccatgggc
agcggaaccagggtgcaggatgtgaatcagttgatgcgtcagtttgagcagatgaagaag
atgatgaagcaaatgaagaataaatcattccggggattcggcggaatgccgttcggaatg
ggttaa

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