Clostridium acetobutylicum ATCC 824: CA_C0715
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Entry
CA_C0715 CDS
T00056
Symbol
vacB
Name
(GenBank) FUSION ribonuclease and ribosomal protein S1 domain
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA_C0715 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cac03019
]
CA_C0715 (vacB)
03016 Transfer RNA biogenesis [BR:
cac03016
]
CA_C0715 (vacB)
Enzymes [BR:
cac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CA_C0715 (vacB)
Messenger RNA biogenesis [BR:
cac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CA_C0715 (vacB)
Transfer RNA biogenesis [BR:
cac03016
]
Prokaryotic type
tRNA degradation factors
CA_C0715 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
CSD
OB_HELZ2
S1_RRP5
WHD_MCM
WHD_eIF2D
Malectin_like
Motif
Other DBs
NCBI-ProteinID:
AAK78692
UniProt:
Q97L50
LinkDB
All DBs
Position
828112..830304
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AA seq
730 aa
AA seq
DB search
MNIRDNILEFMREQAYKPMNIKELSEVFDIGKADYKIFKKLLKDMEKEGLIIKNRTDHFG
VPEKMGLVKGSLQGNAKGFGFVIPEEDRPDVYIPSINMNGALNGDKVVAKILKESDSGKK
CEGEIIRILERANKTVVGVYEDSRNFGFVVADDARIPQDVFIPKGEKNGAKSGDVVVAEI
TVWPKKRRNPEGKIVEIIGSKGEKGVDILTIIKKHKLPEKFPEKVERFAEGIPNEIPESE
YKRRRDIRDVKMVTIDGEDAKDLDDAVSIEKLSNGNFKLGVHIADVSNYVREDNPLDKEA
LKRATSVYLIDRVIPMLPKKLSNGICSLNPRQDRLAMSCFMEIDPTGKVIQHEIFESIIK
TNERMTYTDVTKILRDHDEETIKAFEYLYDDFKNMEELASILNKKRLLRGAIDFDFEESK
ITLNELGKPVEVKPYERAVANRIIEEFMLVCNETIAEHFYWANIPFVYRVHEEPDSEKLE
RFNEFIHNLGYAVRWGSEVHPKQLQDVIEKIKGKKEETVVSTLLLRSLKQARYSPECSGH
FGLAARYYCHFTSPIRRYPDLIIHRIMKEYINGRMDEKRSKKLIGEVDYASMQSSEMERV
AQEAEREVDSLKKAEYMADRVGEEFDGIISSVTNFGIFVQLANTIEGLVHISELTDDYYV
YDEKYLSLVGERTKKIYKLGDEARIKVDKVSVDSHEIYFKLVENKGEAAQGEIKVEAETE
VEAEEEEEEF
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgaatataagggataatatacttgaatttatgagagaacaagcatataagcctatgaac
ataaaggaattatcagaagtttttgatataggtaaagctgattataaaatatttaaaaaa
ttacttaaggatatggaaaaagaaggacttataattaaaaatagaacggaccactttgga
gtaccagaaaaaatgggacttgtgaagggatctcttcaaggaaacgctaaaggttttggt
tttgttataccagaagaggatagaccagatgtatatattccatctatcaatatgaatggt
gcactaaatggagataaggtagttgctaaaattcttaaagaaagtgatagtggtaaaaaa
tgcgaaggtgaaataataaggattcttgaaagagcaaataaaactgtagttggagtatac
gaggatagtagaaactttggttttgtagttgctgatgatgctaggataccacaagatgta
tttattcctaaaggagaaaagaatggtgctaaaagtggagatgtagtagttgctgaaata
acagtatggcctaagaaaagaagaaatcctgagggtaaaatagtagagataattggaagt
aagggagaaaaaggtgtagatatacttacaataataaagaagcataagctcccagaaaaa
ttcccagaaaaagttgaaaggtttgcagaaggtataccaaatgaaataccagaaagtgaa
tacaagagaagaagagacattagagatgtaaagatggtcacaatagatggcgaggatgca
aaggatcttgacgatgctgtatctatagagaagctttcaaatggtaactttaaattagga
gttcacatagctgacgtttcaaattatgtaagagaggataatccgcttgataaggaagct
cttaaaagggcaacttctgtttatcttattgatagagttattccaatgcttcctaaaaag
ctttcaaatggaatttgtagtcttaatccaagacaggatagactagcaatgagttgtttt
atggaaattgatcctacaggaaaggttattcaacatgaaatatttgaaagtataataaaa
acaaacgaaagaatgacgtatacagatgtaaccaaaatacttagagatcacgatgaagaa
actattaaggcttttgaatacctttatgatgattttaagaatatggaagaattagcttct
atacttaacaagaagagattattaagaggagcaatagattttgattttgaggaaagtaaa
ataactcttaatgagcttggaaaaccagtagaagtaaagccatatgagagagcagttgca
aatagaataatagaggaatttatgcttgtttgtaatgaaactatagctgagcacttttac
tgggctaatattccttttgtgtacagagttcatgaagaaccagatagtgaaaaattagaa
agattcaatgaatttattcataacctaggttatgcagtaagatggggatcagaggttcat
ccaaagcagcttcaagatgtaatagaaaagataaaaggaaagaaagaagagacagttgta
agtacgcttcttttaaggtctttgaagcaagctagatattcgccagaatgttcaggtcac
tttggtttggcagcaaggtactattgtcattttacttctccaataagaaggtatccagat
cttataatacacagaataatgaaggaatatataaatggaagaatggatgaaaagagatct
aaaaagctcataggagaggttgattatgcttcaatgcagtcttctgaaatggaaagagtt
gctcaagaagctgaaagagaagtagattccttgaaaaaggcagaatacatggctgataga
gtaggtgaggaatttgatggtataatatcttctgtaacaaactttggtatatttgttcag
cttgctaataccatagaaggtcttgtacacattagtgaacttacagacgattattatgta
tatgatgaaaaatatttaagcctcgtaggagaaagaactaaaaagatatacaaattaggt
gatgaggcgagaataaaagtagataaagtaagtgttgattctcacgaaatatattttaag
ttggttgagaataaaggagaagcggcgcaaggagaaataaaagtagaggcagagactgaa
gtagaagcagaagaagaggaagaagaattctag
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