Clostridium acetobutylicum ATCC 824: CA_C1683
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Entry
CA_C1683 CDS
T00056
Name
(GenBank) Predicted metal-dependent hydrolase of metallo-beta-lactamase superfamily
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA_C1683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cac03019
]
CA_C1683
Messenger RNA biogenesis [BR:
cac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CA_C1683
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
CFAP54_N
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
AAK79649
UniProt:
Q97IF8
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All DBs
Position
1831371..1833038
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AA seq
555 aa
AA seq
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MRREKDKIKIIPLGGVDEIGKNLTVIEYREEIAVIDCGLSFPDEEMFGIDLVIPDVTYLI
KNREKVKGIFLTHGHEDHIGALPYVLKELNVPVYGTKLTIGIVETKLKEHNLLSKVDLKV
VKPRDIIKLNSMSIEFIRQSHSIADSVAIAIHTPMGVVLHTGDFKVDYTPIDGCVADFAR
FAELGKRGVLAMMCDSTNVERPGYTMSETTVGETFNTVFTKAKGRIIVATFASNIHRIQQ
IVEAAERYNRKVAVSGRSMENIVAVAIELGYLKVKEGVLIGIDAINRYADNKIVIITTGS
QGEPMSALTRMAAQEHKKVKIQEGDMVVISANPIPGNEKLVSRVINQLFKKGAEVIYEAL
ADVHVSGHACQEELKLMHTLIKPRFFIPVHGEYRHLKQHKELATNLGMPKANVVIPEIGG
VIELTRSSIKKTDTVVAGKVFVDGLGVGDVGNIVLRDRKHLSQDGIVTVVVTIEKVSGTV
IAGPDIISRGFVYVRESEDLMEESKEIVKTALLECEEKHITEWATIKSNIKDVLRIFLYE
RTKRKPMILPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgcgacgagaaaaagataagattaaaattatacctctaggtggggtggatgaaatagga
aaaaatcttacggttatcgaatacagagaggagatagctgttatagattgcggtcttagt
tttccagatgaagaaatgttcggtatagatttagtaatacctgatgtaacttatttaata
aagaatagggaaaaggtaaagggaatatttttgactcatggacatgaagatcatattggt
gcgttgccttatgttttaaaagagttaaatgttccggtatatggtactaaacttactatt
ggaatagttgaaactaaacttaaagagcataatttgcttagtaaagttgatttaaaggta
gtaaagcctagggatataattaaactcaatagcatgtctattgaattcataagacaaagt
catagtattgcagactctgtagctattgcaatacatacacctatgggtgtagttcttcac
acaggagattttaaggtggattatacacctatagatggatgtgtagcagattttgcaaga
tttgcagagcttggcaagagaggtgttcttgctatgatgtgcgacagcactaacgtagaa
agaccaggatatactatgtcagaaactacagtgggggaaacttttaacactgtatttaca
aaggctaaaggaagaattatagttgcaacttttgcatctaatattcacagaatacagcaa
atagttgaggccgcagaacgctataatagaaaagtagcggtttcgggaagaagtatggaa
aatatagtagctgtagctattgaacttggttacctaaaagttaaggaaggtgttttaata
ggcattgatgccataaatagatacgccgataacaaaatagttataattactacaggaagc
caaggagagccaatgtctgcacttacaaggatggcagctcaggaacacaaaaaagtaaaa
atacaggaaggcgatatggtagtaatatcagctaaccctatacctggaaatgaaaagttg
gtttcaagagttataaatcaattatttaaaaaaggtgcagaagttatttatgaagctttg
gcagatgtccatgtttcaggtcacgcttgtcaagaagaacttaagctaatgcatactctt
ataaagcctagattttttataccagtccatggagaatacaggcatttaaaacagcataaa
gagctggcaaccaatttaggaatgcctaaagctaacgttgtaattccagaaatcggtggc
gttatagaattaacaagaagcagcataaagaaaaccgatactgtagttgcaggtaaagtg
tttgtagatggtcttggtgtaggtgatgtaggaaatatagttttaagagatagaaaacat
ctttcacaggatggaatagtaacagttgttgttactatagaaaaagtaagtggtactgta
attgctggacctgacattatttcaagaggatttgtgtatgtaagagaatctgaagattta
atggaggagtcaaaagaaattgtaaagacagcactgcttgaatgtgaagaaaagcacatt
acagagtgggcaactataaaatcaaacataaaggatgtattaagaatattcctttatgag
agaacaaagagaaagcctatgatacttcctataattatggaagtgtaa
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