Clostridium acetobutylicum ATCC 824: CA_C2687
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Entry
CA_C2687 CDS
T00056
Symbol
recQ
Name
(GenBank) RecQ protein, superfamily II DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA_C2687 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cac03019
]
CA_C2687 (recQ)
03400 DNA repair and recombination proteins [BR:
cac03400
]
CA_C2687 (recQ)
Enzymes [BR:
cac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA_C2687 (recQ)
Messenger RNA biogenesis [BR:
cac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA_C2687 (recQ)
DNA repair and recombination proteins [BR:
cac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CA_C2687 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AAK80634
UniProt:
Q97FP1
LinkDB
All DBs
Position
2808658..2810802
Genome browser
AA seq
714 aa
AA seq
DB search
MDKNIFNILKKYFGYSSFRRGQENIIQSILDGNDTFAIMPTGGGKSICYQVPALYMKGLT
IVITPLISLMKDQVDTLRENGVNASYINSTLSSKETNDILMSALSGHLKILYVAPERLEQ
DYFRNAIKDLTISMVAIDEAHCVSQWGHDFRVSYKRIVPFINIFDKRPIVAAFTATATDE
VKKDIINLLELKEPNCFITGFDRDNLFFSIVKNENKFDFITKYLSKHKELSGIIYAATRK
EVDSLHQKLISQGYSVGKYHAGMGDKERSESQDLFLYDETKLMIATNAFGMGIDKSNVRF
VIHYNMPKNLESYYQEAGRAGRDGEKSECIILFSGQDIQIQKFLIKQSIPSFDRQRIELK
KLNDMINYCMTTSCLRKYILNYFGENYEVENCDNCINCTGNVEIVDITLEAQKIISCIYR
MGQNFGVTMIAEVLKGSKNSKVLRFNFDKLSTYGIMKDCTLKQITNLINTLIADGYLYLS
DSEYATVKMSQKSIEVLKGYKKVVQKIHIVEELSLSTDNTLFEILKALRLEIARRENVPP
YIIFSDSVLSEMCKYYPKDKNSMLQIKGVGEIKYNKYGEIFEEKIREYIKETNLTPEDNN
KGTLKVPELLSKKIPTHIETFNLYKKGITIADMAKIRNLSIPTIQEHILKCANEGLNVNL
DAYIPAEYKDLIYEKIRILGTSKLRPIKDALPDDVDYMAIKAAICKYTSKNKAI
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atggacaagaacatatttaatatattaaagaagtacttcggatattcatcttttagaaga
ggacaagaaaacataatacaaagtatattagatgggaatgacacctttgctattatgcca
actggtggaggtaagtccatctgttatcaggtacctgcactttatatgaaaggactaaca
attgttataactcctctaatttcccttatgaaggaccaggttgacaccttaagagaaaat
ggagttaatgcaagctatataaatagtaccttatcatctaaagaaacaaatgacatctta
atgtcagcactttcaggacatttaaaaattttgtatgtggcccctgaaagattagagcag
gactattttagaaatgcaattaaagatttaactatatcaatggttgctatagacgaggct
cattgtgtatctcaatggggtcatgattttagagttagttataaaagaattgtaccattt
ataaatatatttgataaaaggcctattgttgcagctttcactgctactgcaacagatgag
gtaaagaaagatataataaatttacttgagcttaaagagccaaattgttttattactggt
tttgatagagataacttattcttctcaatagtaaaaaatgagaataaatttgattttata
acaaaatatctttcaaaacacaaggaactttcaggaataatatatgctgcgactagaaaa
gaggttgattcccttcatcaaaagcttataagtcaaggatattctgtagggaaatatcat
gctggcatgggtgataaggaaagaagcgaaagccaagacctttttctttatgatgaaaca
aaattaatgatagccacaaatgcatttggaatgggtatagataaatcaaatgttcgtttt
gtaatacattataatatgccaaaaaacttagaatcttattatcaagaagccggtcgtgca
ggtagagacggtgaaaaaagtgaatgtataatcctatttagtggtcaagatatacaaata
caaaaattcttaataaaacaaagtataccttcctttgatagacaaagaatagaattaaaa
aagctaaatgatatgattaactactgcatgactacctcctgtcttagaaaatatatttta
aactattttggagaaaactacgaagtagaaaactgtgataattgtataaattgtactggc
aatgtagaaatagtagatataacattggaagctcaaaagattatttcctgcatttacaga
atgggacaaaactttggcgtaactatgatcgccgaggttctaaaaggctctaaaaatagt
aaggttttgagatttaactttgataaattatctacttatggaataatgaaagattgtacg
ctaaaacaaattactaatttaataaatacactcatagctgatggctatttgtacctttca
gatagtgaatatgctacagtgaaaatgtctcaaaaaagcatagaagtgcttaagggatac
aaaaaagtagtgcaaaaaatccatattgtagaagaactttcattaagtactgacaatact
ttatttgaaattttaaaggctttaagattagaaatagcgcgaagagaaaatgttcctcct
tacataattttttctgattctgtattaagcgaaatgtgtaaatattaccctaaggataag
aattctatgcttcaaatcaaaggtgttggagaaataaaatacaacaaatacggcgaaata
tttgaagagaagataagagaatacattaaagaaacaaatttaactccagaggataataat
aaaggaactcttaaagtgcccgaactcctttctaaaaagatacctacacatattgaaact
tttaacttatacaaaaagggaattacaatagccgatatggctaaaataaggaatttatca
attccaacaatacaagaacatattttaaagtgcgcaaatgaaggtcttaatgtaaattta
gatgcctacataccagctgaatacaaagatttaatatatgaaaaaataagaattcttggt
acctctaaattaagacctataaaggatgcactgccagatgatgttgattacatggcaata
aaagctgctatttgtaaatatacttctaaaaataaagcaatatag
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