Clostridium acetobutylicum ATCC 824: CA_C2748
Help
Entry
CA_C2748 CDS
T00056
Symbol
deaD
Name
(GenBank) ATP dependent RNA helicase DeaD, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CA_C2748 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cac03019
]
CA_C2748 (deaD)
03009 Ribosome biogenesis [BR:
cac03009
]
CA_C2748 (deaD)
Enzymes [BR:
cac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CA_C2748 (deaD)
Messenger RNA biogenesis [BR:
cac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CA_C2748 (deaD)
Ribosome biogenesis [BR:
cac03009
]
Prokaryotic type
rRNA helicases
CA_C2748 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
SWI2_SNF2
DUF3755
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AAK80694
UniProt:
Q97FI9
LinkDB
All DBs
Position
complement(2877184..2878629)
Genome browser
AA seq
481 aa
AA seq
DB search
MSELSFRDLGLSEEILKSIEKLGYKKPSSIQEKVIPVILNGKDIIAKAKTGSGKTAAFAI
PVCEKIELEEREPQVLVLAPTRELAYQIKEDFLNIGRFKRLRCISIFGKEPISNQIRELK
QRVHIVVGTPGRVLDHIERGTLNLEKVKYFIIDEADEMLNMGFIEQVESILIKMPKNKNT
FLFSATLPEEIVMLSKKYMKNFENIEVQNEGKTKGGIHQVYYEVESREKFDLLKKVIYKE
VPGSSIIFCRTKNNVEDVLVKMKNMKFSCMAIHGGMLQENRIAVMNAFKRGEFTFLIATD
VAARGIDVENVTHVINYDIPMEKESYIHRIGRTGRMGNKGIAITFVTSKEERFLKEIEEQ
FSLEIIKEEPPTREEVKKGQEVFKTASKQLNKTKANKSEKLNKDITKIYLSAGKKKKIRP
GDIAGTISSIDGVSPEDIGIIDIHDNFSYVEILSGKGDIVLNAIEDKTIKGKKVRAEKAQ
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaattaagttttagagatttaggattaagtgaagaaattttaaagtcaatagaa
aagcttgggtataaaaaaccatcaagtattcaagaaaaggttattcctgtaattcttaat
ggtaaggatataattgcaaaggccaaaacaggaagtggaaagacagcggcttttgcaatt
cctgtttgtgaaaaaatagaactcgaagaaagagagcctcaggttctggttttagctcca
acaagagaactagcctatcaaataaaagaggactttttaaatataggaagatttaaaaga
ttaaggtgcataagtattttcggaaaagagccaatttcaaatcaaattagagagcttaag
caaagagtacatattgtagttggtacacctggaagagttctagatcatattgaaagagga
accttgaatctagaaaaagtgaaatactttattatagatgaagcagatgaaatgctcaat
atgggctttatagagcaggttgaaagcatacttataaaaatgcctaaaaataaaaatact
tttcttttctcagcaacactgccggaggaaatagtaatgctttctaaaaagtatatgaag
aactttgagaacatagaggttcaaaatgaaggaaagaccaaaggaggaattcatcaggtt
tactacgaggttgaaagtcgtgaaaagtttgatttgctaaagaaagtaatatataaagag
gtacctggaagctctataatattttgcaggactaaaaacaacgtagaggatgttttggtt
aagatgaaaaatatgaagttttcctgtatggcaatacatggaggaatgcttcaagagaat
agaatagcagttatgaatgcttttaaaagaggagaatttacatttttaatagcaacagat
gtggcggctagaggcatcgatgttgaaaatgtgacacatgttataaattatgatatacct
atggagaaggaaagctacattcatagaattggaagaacgggacgtatgggaaataagggt
atcgcaataacctttgtgacatcaaaggaagaaagatttcttaaggaaattgaagaacag
ttctctttagaaataataaaagaagagcctccaacaagggaagaggttaaaaaagggcaa
gaagtatttaaaaccgcttctaaacagttaaataaaacaaaggcaaataaatctgaaaaa
ctaaataaggatattacaaaaatttatttaagtgcaggaaagaaaaagaagataagacca
ggagatatagcaggaactatatcaagtatagatggggtaagcccagaagatataggaatt
attgatatacatgataacttttcatatgttgaaatattatcaggaaaaggtgatatagta
cttaatgcaattgaggataagacaataaagggaaaaaaagtaagagcggagaaagcacag
aaataa
DBGET
integrated database retrieval system
