Clostridium acetobutylicum ATCC 824: CA_C3216
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Entry
CA_C3216 CDS
T00056
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor, MFD (superfamily II helicase)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cac
Clostridium acetobutylicum ATCC 824
Pathway
cac03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CA_C3216 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cac03400
]
CA_C3216 (mfd)
Enzymes [BR:
cac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CA_C3216 (mfd)
DNA repair and recombination proteins [BR:
cac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CA_C3216 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
UB2H
DUF4047
RecG_dom3_C
Apolipoprotein
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AAK81152
UniProt:
Q97E98
LinkDB
All DBs
Position
complement(3362265..3365780)
Genome browser
AA seq
1171 aa
AA seq
DB search
MRLDGLMHPLKGSNKFQDAIYKIKSNEFPMELSGISESGKSYLISGLYEELDNPFLVITD
SDSEAKKIYEDLLFYTQSVYYLPTKEVVFYNIYAVSGDLRWERLKVIRKMMSRGKKIIVT
SVENLAAVYLPVELYKEYTFKLTLGDTVEAKELQKKLVQCGYEHVESVDAKGQFSIRGGI
VDIYSPIDDVPYRIEFFGDEIESIRSFNTESQRSIEKVNKIEVFPAKEIILTDEALNKGY
EAIKDELNQSLDRLKGNNEESYNKLKETMEYNLEALKERAGFETIDTFIPYFYDNTSSFF
DYLKNSIIFVDNYERCKGKIDSVYCEFEQNYENFLERGDILPKQGNIIVSKENIYEILKT
EKRINLESIGRAANNNFRTGIAFEEITLSSYQGQMDLLINDIKELKEEKYRTVILCGTKS
KGQRLVETLGDRGIESVYKDSILNVDYGEVVISPGSQLRGFRYPEIRLCVISDKEIFGTA
KKKKEKRKNKKGVGKIKSFTELKPGDYIVHVNHGIGVFKGIKQLEVQGHKKDYLELSYAV
DDKLYVPVEQLDLVQKYIGSEGKVPKVNKLGSSEWTKAKNKVRKSINEIAEELVKLYAVR
TTVNGFKYSKDTVWQKQFEEEFPYNETQDQLLAIDEIKNDMESGKVMDRLICGDVGYGKT
EVAIRAAFKTVMDGKQVAFLVPTTILAEQHYNNFKKRFKDFPVEVDMVSRFRSQAQQKAT
FKALKEGNIDIIIGTHRILNKEITFKDLGLLIIDEEQRFGVSHKEKLKKFKKNIDVLTLS
ATPIPRTLHMSLTGVRDISVIETPPEERYPVQTYVVEYNDQLIRDAIMREIGRDGQVFFV
YNKVESIKEMAANLGKLIPEARIAIAHGQMSERELEKVMIDFMEGNYDILLCTTIIETGI
DIQNVNTLIIYNADKMGLSQLYQLRGRVGRTNRMAYAYFTYKKDKILTEVAEKRLKAIKE
FTQLGSGFKIAMRDLEIRGAGNIMGSAQHGHMATIGYDLYCRMLEDTIKEIKGEIQNEPV
ETTVDLKVDAYIPSLYIEDETLKISIYKKIAAIDSYEEMMDVKEELEDRFSSIPQSVNNL
MTIAYLRSIGRQLGILEIKDKMTQLEIKFESNDRVNKKLINGLLKNYSKSILFKMGDNPV
ILYNLKDVKREDMLENLQKFLKYMKSLVETN
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgagacttgatgggcttatgcatcctctgaaaggtagtaataaatttcaagatgctatt
tataaaataaaaagtaatgaatttcctatggaattgtccggaatttctgaatcgggaaaa
agttatttaataagtgggttgtatgaagaattagacaacccttttttggtgattacagac
agtgactcggaagctaagaagatatatgaagatctattattttacacacaaagcgtatat
tatcttccaacaaaagaagttgtcttttataatatatatgctgtatctggagatttaagg
tgggaaagattaaaggttataagaaaaatgatgtctagaggtaagaaaataatagtaacc
tctgttgaaaacttagcagcggtttatttgcctgtagagttatataaagaatataccttt
aaactgaccttaggtgatacggttgaggcaaaagaacttcaaaaaaagttggttcaatgt
ggatacgagcatgttgaaagtgtagatgctaagggacaattttctattaggggaggtata
gtggatatatattctcctatagatgatgttccttatagaattgaattttttggtgacgaa
atagaatcaataagaagttttaatactgaatcacaaaggagtatagaaaaggtaaataag
atagaagttttcccagcaaaagagataatacttactgatgaagcattgaataaaggatat
gaggctattaaagatgaattgaatcagtcgcttgatagacttaagggcaataatgaagaa
agctataataagcttaaagaaaccatggagtataatcttgaagccttaaaagaaagagct
ggatttgaaactatagatacttttattccatatttttatgataatacatctagttttttt
gattatcttaagaactctatcatttttgtagacaattatgaaagatgtaaaggaaagata
gatagtgtatattgtgaatttgagcaaaattatgaaaacttccttgaaagaggagatatc
cttccaaagcaaggtaatataatagtttctaaggaaaatatatatgaaatattaaaaaca
gaaaaaagaataaacttagaatctataggaagagcagctaataataactttaggactgga
atagcatttgaagaaatcactctttcaagttatcagggacaaatggatctgctcattaat
gatataaaggaattgaaagaggaaaagtatagaacggttatattatgtggaacaaaatct
aagggacaaaggcttgttgagacgcttggtgataggggaatcgagagtgtgtataaagac
agcattcttaatgtagattatggggaggttgtcatatcacctggaagtcagcttagaggt
ttcaggtatccggagataaggctatgtgtaatttcggataaggagatatttggaacagct
aaaaagaagaaagagaaaagaaaaaataaaaaaggtgtaggaaagattaaaagctttaca
gagcttaaacctggcgactatattgtacatgttaatcatggtattggtgtattcaaaggc
ataaagcagcttgaagttcaagggcataagaaagattatctagagcttagctatgcagtt
gatgataaattgtatgtaccagtagaacaacttgatttagtacaaaagtatataggaagc
gaaggtaaggtacctaaggtaaataagcttggaagtagtgaatggactaaggctaaaaat
aaggttaggaagtccataaatgagatagctgaggaacttgtaaaattatatgcagtaagg
acaactgttaatggttttaaatattcaaaggatactgtttggcaaaagcagtttgaagaa
gaattcccatataatgaaacacaagatcaacttcttgcaatagatgaaataaagaatgat
atggaaagtggaaaagtcatggataggcttatatgtggagacgttggatacggtaaaaca
gaagtcgccataagagctgcctttaaaacagttatggatgggaaacaagtggcttttctt
gtaccaacaacaatacttgcagaacagcattataataattttaaaaaacgatttaaggat
tttcctgtcgaggtagacatggtaagtaggtttagaagtcaagctcaacagaaggcaact
tttaaagccttaaaagaaggaaacattgatataataataggaactcatagaattttaaat
aaagaaattacttttaaggatttgggacttcttataatagacgaggagcaaagatttgga
gtttctcataaggaaaagcttaagaaatttaagaagaatatagatgttttaactttatca
gcaactcctataccaagaactcttcatatgtcacttacaggagttagagatataagcgta
attgaaacgcctccagaagaaagatatccggtacaaacttatgtagtagaatacaatgat
caattaataagagatgcgataatgagggaaattggaagagatggtcaagtattctttgtg
tacaataaggtggagtcaataaaggaaatggctgctaatttagggaagcttataccggaa
gctagaattgcaatagctcatgggcagatgtctgaaagagaacttgaaaaagtaatgatt
gattttatggaaggaaattatgatatattactttgtacaactataatagagactggaatt
gatatacaaaatgtaaacacccttataatttataatgctgataagatggggctttctcaa
ctttaccagcttagaggaagagttggtagaacaaataggatggcatatgcttattttact
tacaagaaagataaaattttaacagaggttgcagagaagaggcttaaagcaataaaagag
tttactcaactgggatccggattcaaaattgcaatgagagatctcgaaataagaggcgct
ggaaatataatgggatctgcacaacatggacatatggctactataggatatgatttatac
tgtagaatgttagaagatactataaaggaaataaaaggtgaaattcaaaatgaacctgtt
gaaaccactgtggatttaaaagtagatgcgtatataccaagtttatatattgaagatgaa
actttgaaaatatcaatatataagaagatagcagcaatagattcctacgaagaaatgatg
gatgtaaaagaagagcttgaagatagattttcttcaataccacagtcagttaataatctt
atgactatagcttatttaagaagtataggtagacaattaggtattctggaaataaaggat
aaaatgactcagcttgaaattaaatttgagagcaacgacagagttaataaaaaattaata
aatggactgcttaagaattacagtaagtctattttgtttaaaatgggcgataatccagtg
attttgtataatttaaaagatgtaaagagggaagatatgttagaaaatttacaaaaattc
ttaaaatatatgaaatctctagttgaaacaaattaa
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