Corynebacterium accolens: CACC_09220
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Entry
CACC_09220 CDS
T08449
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cacc
Corynebacterium accolens
Pathway
cacc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cacc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CACC_09220 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cacc03019
]
CACC_09220 (rne)
03009 Ribosome biogenesis [BR:
cacc03009
]
CACC_09220 (rne)
Enzymes [BR:
cacc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CACC_09220 (rne)
Messenger RNA biogenesis [BR:
cacc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CACC_09220 (rne)
Ribosome biogenesis [BR:
cacc03009
]
Prokaryotic type
rRNA processing factors
CACC_09220 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
UQZ28530
LinkDB
All DBs
Position
complement(1902210..1906067)
Genome browser
AA seq
1285 aa
AA seq
DB search
MAAQNSQETTENLQAAAALAQRIDPSELKDKTRVYALAKKLGLSSRQLVAQLKDMGLNKT
AQSSITRAEAGDLFAALARHEGGSDAEQPAIADESPAEAKPESKTKTTKRARRTRKATKK
SAPAAKKKPAQADAAEADSAPADNTAADAEEEKNLRYRVRKNVDNEISQIEEKVDASLVK
SALPDVKQAPDRLPDPEPANAPARAEDDAPADADAAGASEATGTVDPAKLHEVLAEAGED
FDDDYYAPRIVPRAETDDDSAAYDFAPLFMPPQQQDAAELGEDDAADMAAIAEAADVAEP
SDDAEPDEAEAGNKAARGGSDKRRRGRRGTSRGRGGNESSKKEAADKEPELIDEPKAIRG
STRIEAQKRRRAELREKGRERQHIVSQAEFLARREAVERTMVVRDKQREDGAGVVTQVGV
LEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEIDWRKT
KLHGRSRKVENTLKSGDQILVQVAKDPIGHKGARLTTRISLAGRYLVYVPGGRSAGISRK
LPAPERKRLKDILGRVVPGDGGAIIRTAAENVPEEAIATDVQRLHNRWEDISAQAKKEKS
SKGAKPVTLYEEPNMLIKVVRDLFNEDFHRLIVDGKRSFNTVNAYVESMAPDLADRVVRY
KPKDHGGQDAFAAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGN
LEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRTRH
QVSEVTSLGLVQMTRKRLGTGLVETFSTECEHCHGRGIIIHEYPVDEAEDNHSGHHSHGS
SKAHKKPEHDPQQHPAAVVMHEHDDEDERAEKKGQKGRKGRRNATSQPQKYQKTDAPLYG
NEDEQSPSLEELVANVVVDDETGDSEQKDSQKRADNARGHRDDRGRSEGKQKKRRRAQKK
SEVSEIEAIAYAAADNAAESDEVQEFNSYVPDGREAPAKEKKRTQRGKKPRRATRTSPAT
RRAQEQPNKRQQAAEGKAEEKKAEVADAPEKTYEEAVAEFEASPRRKHRTRGNSRSDNRP
RPEDFAQPQQAESASSSDKARGDDVAQQEGEQQQSRGKARGRGRRRSVRTQPNSRRATVQ
ASHRANAQEAQHGDKGEDSSRTAEQRHENISGGKKNSPAQGGRRGKRRVVRTNPRDKATS
HNAGTPSATPVQGEKDSQKASAPQTETKVIRRGKKRAVKKTGAPAAAARQERAGEKASTN
APETPQTGAKDAGRRQRRVARRSTS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacagaactctcaagaaacaactgaaaacctccaggcagccgcggctttggcc
cagcgcatagacccgagcgagctcaaagataaaacccgcgtgtatgccttggccaaaaag
ctcggcttatcgtcacgccagctggtggcccagcttaaggacatgggcctgaacaagacc
gcgcagagctccattacccgcgcggaagcaggcgacctttttgctgctctagcccgccat
gaagggggctcggatgcggagcagcctgcaatcgcggacgagagcccggcagaagcaaag
cctgagagcaagaccaagaccaccaagcgggctcggcgcacccgcaaggccacgaagaag
tccgcgcccgcggcaaagaaaaaaccagcgcaggcagatgccgcggaggcagatagcgcc
ccggctgacaacaccgcagccgatgcggaagaggaaaagaacctgcgctaccgcgtgcga
aagaacgtggacaatgaaatctcccagattgaggaaaaggtcgatgcatcgctggtaaaa
agcgcattgccggatgtaaagcaggcgccggaccgtctgccggatcctgagccggcgaac
gcgcccgcgcgcgctgaagatgatgcccctgccgacgctgatgctgctggtgcgagcgaa
gcgaccgggaccgtggatccagcgaagctgcatgaggtgctggcagaggctggcgaagac
ttcgacgatgattactatgcaccgcgcatagtcccgcgcgcggagacggacgacgattcc
gccgcatatgacttcgcgccgctgtttatgccgccgcaacagcaggatgccgccgagctt
ggcgaggacgatgccgcggacatggcggcgatcgctgaagccgctgatgtggcggagcct
agcgacgacgccgaacccgacgaggccgaggcaggcaataaggcagcgcgcgggggttct
gacaagcgccgccgcggccgccgcggtacctcccgcgggcgcggcgggaacgagagctcc
aagaaggaggcggcggataaggagccggagcttatcgatgagcccaaggctatccgtggc
tccacccgcatcgaggcacagaagcgccgccgcgcagaattgcgcgagaagggccgcgag
cgccagcacatcgtctcccaggcggaatttttggcgcggcgcgaggccgtggagcgcacc
atggtggtgcgcgataagcagcgcgaggacggcgcgggcgtcgtcacgcaggttggcgtg
cttgaagatgacctcttggtcgagcacttcgttaccaccgagtcccaggcctccctcatt
ggcaatatttacttaggccgcgtgcaaaacgtcttgccgtctatggaggcggcatttgtg
gacatcggccaaggccgcaatggtgtgctctatgccggcgagattgactggcgcaagacc
aaattgcacgggcgctcccggaaggtagaaaataccctgaaatccggcgaccagattttg
gtgcaggtggcaaaggatccgattggccacaagggtgcgcgactgaccacccggatttcc
ttggccgggcgctacctcgtctacgttccaggcgggcgcagcgccggaatctcacgcaag
ctgccggcaccggagcgcaagcgcctgaaagacatcttgggccgcgtggtgccaggcgat
ggcggcgccatcatccgcaccgctgccgaaaacgttcccgaagaggccatcgcaaccgac
gtgcagcgcctgcataaccggtgggaagatatttccgcccaggccaagaaggaaaaatcc
tctaagggcgctaaaccggtcacgctttatgaagagccgaatatgctcatcaaggttgtc
cgtgacctcttcaacgaagatttccaccgcctgatcgtggacgggaagcggtcctttaat
acggtcaatgcctacgtggaatccatggccccggatcttgcggaccgcgtggtgcgctat
aagccgaaggaccacggcggccaagacgcctttgccgcctaccgcattgatgagcagctg
cataaggcgctctcgcgcaaggtgtggctgccctctggcggcaccttggtcatcgaccgc
accgaggccatgaccgtcatcgacgtcaacaccggcaagttcaccggctccggcggcaac
ctggaagagaccgtgacccgcaataacctggaggctgccgaggaaatcgtgcgccaaatg
cgcctgcgcgatctgggcggcatgattgtggtggactttattgacatggtgctgccggaa
aaccaggatctggttttgcggcgcctgaaggaggccttgggccgtgaccgcacgcgccac
caggtgtccgaggttacttccctgggcttggtgcaaatgacgcgcaagcgtttgggcacc
ggcctggtagagaccttttccaccgaatgcgagcactgccatggccgcggcatcatcatc
cacgagtacccggtcgatgaagcagaagacaaccactccggccaccactcgcacggttcc
tccaaggctcacaagaagcctgagcacgatccccagcagcatccggctgccgtggtcatg
cacgagcacgacgatgaggacgagcgcgcggagaagaaggggcagaagggacgcaagggc
cgcaggaatgccacgtcccagccgcagaagtaccagaagacggacgccccgctctacggc
aacgaggacgagcagtcaccgtcgctggaagagctggtggccaatgtcgtcgtagacgat
gagaccggtgactccgagcagaaggattcccagaagcgtgccgataacgcccgcggacac
cgcgacgaccgaggccgcagcgagggcaagcagaagaagcgccgccgggcgcagaagaag
tctgaggtctctgaaatcgaggccatcgcctatgccgcggcggacaacgccgccgaaagc
gatgaggtacaggaatttaattcctatgtgcccgatggccgagaagcaccggcgaaggag
aagaagcgcacccagcggggcaagaagccgcgccgggcaacgcggacctcgcctgcgacc
cgtcgcgcgcaggagcagccgaacaagcgccagcaggccgctgaaggaaaggctgaggaa
aagaaggcagaagttgccgatgcgccggagaagacctacgaggaggcagtagccgagttt
gaggcctctccgcgccgcaagcaccgcacacgcgggaattcgcgttccgataatcgcccg
cgcccagaggattttgcccagccacaacaggcggaatccgcgagttcctccgataaggcc
cgcggtgacgatgtggcccagcaggaaggcgagcagcagcagtcccggggcaaggcacgc
gggcgcggccggcgccgcagtgttcgcacccagccgaactctcgccgggctaccgtgcag
gcttcgcaccgggccaacgcccaggaggcgcagcacggcgataagggcgaggactcctcg
cggacggcggagcagcgccacgaaaatatcagtggcgggaagaagaattccccggcacag
ggaggccgtcgcggcaagcgccgcgtggtgcgtaccaacccgagggataaagccacctcg
cacaacgcgggtacgccttcggctacacctgttcaaggggagaaggattcccagaaggct
agcgccccgcagaccgagaccaaggttattcgccgtgggaagaagcgcgcggtgaaaaag
acgggggcgccggcagcagctgcgcgacaggaacgtgctggggaaaaggcgtctacaaac
gcgccggagaccccgcagactggagctaaggatgcgggccggcggcagcgccgcgtagca
cggcggtctacgtcctag
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