Clostridium aceticum: CACET_c11530
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Entry
CACET_c11530 CDS
T03971
Symbol
cshA1
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cace
Clostridium aceticum
Pathway
cace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CACET_c11530 (cshA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cace03019
]
CACET_c11530 (cshA1)
03009 Ribosome biogenesis [BR:
cace03009
]
CACET_c11530 (cshA1)
Enzymes [BR:
cace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CACET_c11530 (cshA1)
Messenger RNA biogenesis [BR:
cace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CACET_c11530 (cshA1)
Ribosome biogenesis [BR:
cace03009
]
Prokaryotic type
rRNA helicases
CACET_c11530 (cshA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SecA_DEAD
CMS1
Cas3-like_C_2
OST48_N
Motif
Other DBs
NCBI-ProteinID:
AKL94618
UniProt:
A0A0D8I8A6
LinkDB
All DBs
Position
1224131..1225543
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AA seq
470 aa
AA seq
DB search
MRKNFFNLGIDMELENLLNKNGIVEPTPIQSQTIPPLLTGKDVIAQAQTGTGKTLAFMLP
IMQNIDTKTSSIQALIMTPTRELALQITNEAKKLISAKGINVLAAYGGQDVEKQIRRLKK
DVHMVIGTPGRLLDHLRRRTIDFRQLKMLVLDEADQMLHMGFLQEVEEIIHQTSKNRQTM
LFSATMPKEIHNLAAQYMNKPVHIRVKSEKITLDEIKQLVIETTDRRKQDALFEALGKHN
PFLAIIFCRTKRRASALNEALIQGGYASDELHGDLSQAKREKVMKAFRKAEIQLLVATDV
AARGLDIEGVTHIFNYDIAQDAEAYIHRIGRTGRAGQRGMAITFVTPKDQHNLSIIEKGI
DMKIQRQKSDEEKQERNRKDTRDTRDTRDTRDTKDAREGKHKKSNDFRDKNYSKDKKFGK
GKGTDSKKSFKNNRGDENRSSFKEKPKSGGKPAGKDSRSRNKNTRKSSRY
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaacttttttaaccttggaatcgatatggaattagagaatttattaaataaa
aatggtattgttgaaccaactcctatacagtcacagactattccaccacttttgacaggt
aaggatgtgatcgctcaagcccaaacaggcactggaaaaaccctagccttcatgctgcct
atcatgcaaaatattgacacaaaaacgtcttctatacaggctttaatcatgacgcctacc
agagaattagcacttcagatcacaaacgaagctaaaaaattgatctcagctaaggggatc
aatgtattagcagcctatggtggacaagatgtggaaaaacagattcggagactaaaaaag
gatgtacatatggtaattggtacgccgggaagacttttagaccatcttagaagaagaacc
atcgattttcgtcaattaaagatgttggtgttggatgaggctgaccagatgcttcatatg
ggatttttacaagaagtagaagaaatcatacaccaaacctcaaaaaaccgtcaaaccatg
ctgttttctgccactatgccaaaggaaatacataatttagctgcccaatacatgaataaa
cctgttcatatacgggtgaagagtgaaaaaataaccttagatgagatcaaacaacttgtt
attgaaaccaccgatagacgtaaacaagatgcattgtttgaagctcttggtaagcataat
ccctttttagctattattttttgccgtacaaaacgtcgtgccagcgctttaaatgaagca
cttatacagggtggttacgcttcagatgaattgcatggagatttaagccaagcaaagcgt
gaaaaggtgatgaaggcttttaggaaagcagagatacaacttcttgtagccacagatgtg
gcggctagagggctagatatagaaggtgtaacacatatattcaattatgatatagctcaa
gatgctgaagcctatattcatcgtatagggcgaacaggtcgtgcgggacagcggggaatg
gccatcacctttgtgacacccaaggatcagcacaatttgagtatcatagaaaaaggaata
gacatgaagattcagcgacaaaaatcagatgaggaaaaacaagaaagaaacagaaaagac
actagagacacaagagatacaagagatacaagagatactaaagatgctagagagggaaaa
cataagaaaagcaatgactttagagataaaaattattctaaagataagaaatttggcaaa
ggcaaaggtaccgatagtaaaaagagctttaaaaacaatagaggtgatgagaatcgcagt
agctttaaagagaagcctaaatcaggaggaaagcccgctggcaaggattcaagatctaga
aataaaaatactaggaaatcctcaagatattag
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