Clostridium aceticum: CACET_c23990
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Entry
CACET_c23990 CDS
T03971
Symbol
cshA2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cace
Clostridium aceticum
Pathway
cace03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cace00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CACET_c23990 (cshA2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cace03019
]
CACET_c23990 (cshA2)
03009 Ribosome biogenesis [BR:
cace03009
]
CACET_c23990 (cshA2)
Enzymes [BR:
cace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CACET_c23990 (cshA2)
Messenger RNA biogenesis [BR:
cace03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CACET_c23990 (cshA2)
Ribosome biogenesis [BR:
cace03009
]
Prokaryotic type
rRNA helicases
CACET_c23990 (cshA2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
Cas3-like_C_2
WSD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKL95845
UniProt:
A0A0D8I8B2
LinkDB
All DBs
Position
complement(2497876..2499462)
Genome browser
AA seq
528 aa
AA seq
DB search
MKNIEFQDLNIEKNILKAIEEMGFEAPTPIQSQALPKLYEGKDIIGQAQTGTGKTAAFGI
PMIEKVNQKDKSVQILILTPTRELSMQVADELRKFAKYLPETRSLAIYGGQPIERQIKAL
KQGVQIVVGTPGRIIDHIRRKTLKLDKVIGVVLDEADQMLDMGFLEDIETILDTTPKDRQ
TAMFSATMPREIENIGKKYLKSPEKIKVVHKELTVPKIGQYYFEVKNHEKLDALCRVLDM
EESELGMIFCRTKKGVDELVESLQSRGHSVEGLHGDLKQSQRDRVMKKFRDGIIDFLVAT
DVAARGIDVDDVELVINYDIPEDFEYYVHRIGRTGRAGRTGLAYTFVAGRQLRTLKALET
YAKTKIKRKNIPTINDIAEKQRETIAKNIVATIEKGGIAEYTNFVEKLSEDHSSIDIAAA
LLKLMINKNEEESIEAAEDVASKDTGAEPGMVRMFLNIGKKHGATPGNILGAITGESGIE
GNMVGVIDIFDKFTFVEVPEKHANKVLTAMNKNRIKGRKINMEPANKR
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgaagaatattgaattccaagatttaaacattgagaaaaacattttaaaagctattgaa
gagatgggctttgaagcacctacccccatccaatcccaagccttacccaaactatatgaa
ggaaaagacatcataggtcaagcacaaacaggaacaggaaaaactgcagcctttggcata
cctatgattgaaaaggtaaatcaaaaggataaatccgttcaaatattgatactaactcct
actagagagctgtctatgcaggtagctgatgaacttagaaagtttgccaagtatttacca
gagacaagatctttagctatctatggaggtcagcctatagagagacaaattaaggcatta
aaacaaggagtacaaattgttgtaggtacccctggaagaataatcgaccatatccgaaga
aagacactaaaattagacaaggtaattggtgttgttttagatgaggcagatcaaatgcta
gatatgggctttttagaagatatagaaaccatattagatacaacacctaaggatcgtcag
acagctatgttttctgctacgatgcctagagaaatagaaaacataggtaaaaagtacttg
aaaagtcctgaaaaaataaaagtagtacacaaggaattaactgttcctaagattggtcaa
tattattttgaagtaaagaatcatgaaaaacttgatgccttatgtagggttttggatatg
gaagaaagtgaactaggaatgattttctgtagaacgaaaaaaggtgtagatgaattggtg
gaaagtctacaaagtagaggtcactctgtagaaggacttcacggagatctaaaacaaagt
caaagagatcgagtcatgaaaaagtttagagatggtattattgacttcttagtagctaca
gatgtggcagctagaggtattgacgtagatgatgtagagttagttattaactatgatatt
cctgaagattttgagtattatgttcacaggataggtagaacaggaagagcaggaagaaca
ggacttgcctatacttttgttgctggaagacagcttagaactttaaaagctttagaaacc
tatgcaaagacaaaaattaaaagaaaaaatatacctaccataaacgacattgccgaaaag
caaagagaaaccatcgctaaaaatattgttgctaccattgaaaaaggtggtattgcagaa
tatactaactttgtggaaaaattatcagaagatcatagctctattgacatagcagcagct
ttattgaaattgatgatcaataagaatgaagaagagtccatagaagcagcggaagatgtg
gcctctaaagatacaggagcagagccaggaatggttagaatgttcctgaatataggtaag
aagcatggagctactcctggaaatattttaggtgccatcactggtgaatcaggaatagaa
ggaaatatggtaggggtaatagatatatttgataaatttacttttgttgaagtgcctgag
aaacatgcaaataaagttttaacggctatgaataaaaaccgtatcaaaggtagaaaaatc
aatatggaacctgctaacaaacgatag
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