Clostridium aceticum: CACET_c34070
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Entry
CACET_c34070 CDS
T03971
Symbol
ligT
Name
(GenBank) 3'-5' RNA ligase LigT
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
cace
Clostridium aceticum
Brite
KEGG Orthology (KO) [BR:
cace00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cace03016
]
CACET_c34070 (ligT)
Enzymes [BR:
cace01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
CACET_c34070 (ligT)
Transfer RNA biogenesis [BR:
cace03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
CACET_c34070 (ligT)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Dynein_heavy
Motif
Other DBs
NCBI-ProteinID:
AKL96850
UniProt:
A0A0D8IBD4
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All DBs
Position
complement(3609840..3610388)
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AA seq
182 aa
AA seq
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MRLFIGIDLPDKMKQNLFQLQSELRGYGVKGSWKAIENLHITLEFLGELESDAIPILTNS
LSKVTSNHKPFNLSIKGLGAFPSLKKPNILWSALEENLILLHHLRDELHTELIKSGYNLE
ERPFKPHITLVSRPKLEAVDLAEFHTKKIGEFTVKDVVLFESRHIKGKLTYIDLFRVNLP
LF
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgcgattatttatagggattgatttacctgataagatgaagcaaaatctctttcaactt
caatctgagttgagagggtatggtgttaagggatcgtggaaggctatagaaaaccttcat
ataaccttagaatttttaggagaactagaaagcgatgccattcctatcttgaccaatagc
ttgtctaaagtaacaagcaaccataaaccttttaatctaagtataaagggattaggggct
tttccttcattaaaaaaacctaatattttgtggtcagccctggaggagaacttaatccta
ttacatcacttaagggatgagctgcatactgagttaataaaaagcggctataacttagaa
gagagaccctttaaacctcatatcactttagtttctcgccctaagctggaggctgttgat
ttagctgaatttcataccaagaaaataggagaatttactgttaaggatgttgttttattc
gaaagtagacatataaagggaaaattgacttatatagatctgttcagagtgaatcttcca
cttttttaa
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