Clostridium aceticum: CACET_c36310
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Entry
CACET_c36310 CDS
T03971
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cace
Clostridium aceticum
Pathway
cace03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cace00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CACET_c36310 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cace03021
]
CACET_c36310 (rpoB)
03400 DNA repair and recombination proteins [BR:
cace03400
]
CACET_c36310 (rpoB)
Enzymes [BR:
cace01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CACET_c36310 (rpoB)
Transcription machinery [BR:
cace03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CACET_c36310 (rpoB)
DNA repair and recombination proteins [BR:
cace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CACET_c36310 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
TREH_N
NOA36
Motif
Other DBs
NCBI-ProteinID:
AKL97062
UniProt:
A0A0G3WGP2
LinkDB
All DBs
Position
complement(3832967..3836719)
Genome browser
AA seq
1250 aa
AA seq
DB search
MPHPVEVGKKVRMSYSQIDEVVDMPNLIELQKESYQWFLDEGLKEVFNDISPIEDYTGNL
ILEFVDYSLDENIKYDVEESKERDVTYAAPLKVKVRLINKETGEVKEQEVFMGDFPIMTD
TGTFIINGAERVIVSQLVRSPGVYYSREFDKTGKPLFSSTVIPNRGAWLEYETDSNDVVS
VRIDRTRKQPVTVLLRALGYGNDQQIKDLLGEDERLLATLEKDNTKNTDEGLLEIYKKLR
PGEPPTVESATSLLNSLFFDPKRYDLAKVGRYKLNKKLSLANRILNKKAAENIMNPITGE
IMVEEGQKIDRDTSVAIQNAGINVVSVYSEEHKAVKVLGNHFVDIRTHVAFNIDDLKIKE
KVYYPLLKEILDTFQTEEEIKEAIKDKKRELIPKHVIVSDIIASINYIFNLAHDIGNIDD
IDHLGNRRLRSVGELLQNQFRIGLSRMERVVKERMTIQDVELVTPQALINIRPVAASIKE
FFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETP
EGPNIGLINSLSTYARVNEYGFIESPYRKVDRKRMVVTSEIEYLTADEEDLFIVAQANEP
LDEEGRFANKRVTVRTRFGGIDVVPYNEVDYMDVSPKQVVSVATAMIPFLENDDANRALM
GSNMQRQAVPLLITNAPIIGTGMEYKAAKDSGVVVVSRSSGVVDKVSANEIIIKTEDGKK
DRYKLLKFKRSNQGTCINQRPIVNKGEVIKAGDVIADGPSTDQGEIALGRNCLIGFMTWE
GYNYEDAILINEKLVEEDALTSIHIEEYEADARDTKLGPEEITRDIPNVGEDALKDLDER
GIIRIGAEVQSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLKVPHGESGII
VDIKVFTRENGDELPPGVNELVRVYIAKKRKINVGDKMAGRHGNKGVISRVLPQEDMPFL
ADGTPLEIVLNPLGVPSRMNIGQVLEIHLGLAAKALGWKVATPVFDGANEEDIMDALEEA
GYPRSGKLTLYDGRTGESFDNPVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPLGGK
AQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYECIVKGENIPEPGVPES
FKVLIKELQSLCLNVKVLMEGEQEVEIKESIEDDVADLNMEHGDFPYAPEDEADQNEIND
DDEEQEEQEEQEEEIEIDEDYIIEDEELKKSGYKDEFLEDFDGYDDDYED
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atgccacatcctgtcgaagttggtaagaaagttagaatgagctattcacaaattgacgaa
gtcgtcgacatgcctaacctcatcgaacttcaaaaagagtcctaccaatggtttttagat
gaaggacttaaagaagtgttcaatgatatttcccccatagaagattacactggcaattta
attttagagttcgtagactattccttagacgaaaatattaagtatgacgtagaggaatca
aaagaacgagatgttacctatgccgcccctttgaaggtaaaagtaagattaatcaataaa
gaaacaggggaagtaaaggagcaagaagtctttatgggagatttccctatcatgacagat
acagggacatttatcattaatggtgctgaaagggttattgttagtcagctagtccgatct
cctggggtgtattatagcagggaatttgacaaaacagggaagccgcttttttcttctact
gttattcccaatagaggagcatggctagaatatgaaacagattcaaacgatgttgtttca
gtaagaatagatcgtacccgtaaacagccggtcacagtgcttttaagagctctaggttat
ggaaatgatcagcaaattaaagatctattaggagaagatgaacgtcttctggctacattg
gaaaaagataatacaaagaatacggatgaaggactattagaaatttataaaaaattaaga
cctggtgaaccgcctaccgtagaaagtgctacatctttgttgaattctttgttctttgat
ccaaaacgctacgacttggcgaaggtgggtagatacaagctaaataaaaagctatcttta
gctaatagaattttgaacaaaaaagcagcagaaaatatcatgaatcctattacgggagaa
atcatggtagaagaaggacagaaaatcgatcgtgatacatccgtggccatacaaaatgca
ggaattaatgttgtgtcagtatattctgaagaacataaagctgtaaaagtgttgggtaac
cactttgttgatataagaacccacgttgcctttaatatagatgatctaaaaattaaagag
aaggtatattacccattattaaaagaaatattagatactttccaaacagaagaagaaatc
aaagaggcaataaaagataaaaaaagggagttaatacctaagcatgttattgtgtcagat
attattgcatctataaactatatatttaacttagctcatgatataggaaatattgatgac
attgaccatttgggaaatagaagactacgttcagtaggtgaattacttcagaatcaattt
agaattggtttatctagaatggagagagttgttaaggaaagaatgacgattcaagatgta
gaactagttacgcctcaagcattgatcaatatccgtcctgtggctgcttctattaaagaa
ttctttggaagttcacagttatctcaatttatggatcaaactaacccattagcagaacta
acccataagagaagactctcagctcttggtccaggaggtctttcaagagaaagagcaggt
tttgaggtaagagacgttcatcattctcattatggtagaatgtgcccgatagaaacccct
gagggaccaaacatcggcttaattaactctttaagtacatatgctagggtaaatgagtat
ggatttattgaatccccttacaggaaagtagatcgcaaaagaatggtagttaccagtgag
atagaatatcttacagcagacgaagaggatctatttattgttgcacaggccaatgagcct
ttagacgaagaaggacgctttgcaaataaaagagtaacagtaagaacgcgatttggaggc
atcgatgttgtaccatacaacgaagtggactatatggatgtatcgccaaaacaagtagtt
tcagtggcgactgctatgattcctttcttagagaatgacgatgctaaccgtgctttgatg
ggatctaacatgcaacgtcaagctgttccgttgttgatcaccaatgcgcccatcattggt
actggcatggagtataaagcagctaaagactctggagttgttgttgtatctagaagcagc
ggtgttgttgataaggtttccgctaatgagatcatcatcaagacagaggacggaaagaag
gacagatataagcttctaaaattcaaaagatcaaaccaagggacttgcattaatcaaaga
cccatcgttaataagggtgaagtaattaaagcaggtgatgttattgccgacggcccttca
acagaccaaggagaaattgcattaggtagaaattgtcttataggtttcatgacatgggaa
ggttataactacgaagatgctattttgattaatgaaaaattagtagaggaagatgcgctg
acatctattcatatcgaagaatatgaggcagatgctagagatacaaaattgggtcctgaa
gagattactcgagatattcccaatgtaggtgaagatgctttaaaggacttagacgaaaga
gggattattcgtataggagctgaagtgcagtctggggacattttagtaggcaaagtaaca
ccgaagggtgaaactgaactgacagcagaagaaaggttgctgagggcaatctttggtgaa
aaggctagagaagtaagggatacttctttaaaggtgcctcatggtgaatcaggaattatt
gtagatatcaaagtttttactcgggaaaatggtgatgaactacctccaggtgttaacgaa
ctagtaagggtgtacatcgctaaaaagagaaaaataaatgttggagataaaatggctgga
cgtcacggaaacaaaggggttatttcaagggtattacctcaagaagatatgcctttctta
gcggacggaacgcctttagagattgttttaaatccactaggagtaccttcccgtatgaat
attgggcaggtattggaaatccatttaggtctagcggcaaaggcactaggatggaaggta
gccacaccagtatttgatggtgcaaatgaagaagatattatggacgcactagaggaagcc
ggataccctaggagtggaaaattgacgctttacgatggaagaactggagaatcatttgat
aatccagtaacagtaggatatatgtatatgttaaaactgcatcacttagttgatgataag
attcatgccagaagtactggtccttactcccttgttacgcagcagccattaggaggaaaa
gctcagtttggtggtcaacgttttggagagatggaggtttgggcactggaggcttatggt
gctgcctatacattacaggaaattcttacagtaaagtctgatgatgtggtgggacgtgtc
aaaacctatgaatgtattgttaagggagaaaacattcctgaaccaggggtgcctgaatct
tttaaagtacttataaaagagctacaaagtttatgtttaaatgtaaaggtactaatggaa
ggagaacaagaggtggaaattaaagagtccatagaagatgatgtagcagatcttaatatg
gaacatggtgatttcccatatgctcctgaagatgaagcagatcaaaatgaaataaatgac
gatgatgaagagcaagaagagcaagaagagcaagaagaagagatagagatagatgaagac
tatatcatagaagacgaagaactaaaaaagtcaggctataaggatgaatttctagaagat
tttgacggatatgatgatgattatgaggattaa
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