| Entry |
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| Symbol |
rpoC
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| Name |
(GenBank) RNA polymerase, beta' subunit; binds Zn(II)
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| KO |
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| Organism |
caci Candidatus Cloacimonas acidaminovorans
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:caci00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CLOAM0455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:caci03021]
CLOAM0455 (rpoC)
03400 DNA repair and recombination proteins [BR:caci03400]
CLOAM0455 (rpoC)
Enzymes [BR:caci01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CLOAM0455 (rpoC)
Transcription machinery [BR:caci03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CLOAM0455 (rpoC)
DNA repair and recombination proteins [BR:caci03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CLOAM0455 (rpoC)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
complement(513646..518175)
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| AA seq |
1509 aa
MILNLSKKRTSRRREKMLKESKHEIKPNEYDAVRIKIASPETIRNDWSHGEVTKPDTLNY
RTLKPEKDGLFCERIFGPERDYECACGKYKKKRFQGTVCDRCGVLVTTSRVRRTRMGHID
LAVPIAHIWFVKSAPSKIGTLLDMTVKDLERVLYYESFIVIDPGDSPFEKMELLEVDEYY
EIKDKVADNFLALMGGEAIRELLKRINLKNEALDLRTRLKFEESALRKQKLINKLKIVDA
FIKSGNRPEDMILEALPVLPPTLRPLVPLEGGRFATADFNDLYRRVITRNNRLKALLEIR
APEVILRNEKRMLQEAVDALIDNGRKARPVRGRGNRPLKSLTDQLKGKQGRFRQNLLGKR
VDYSGRSVITVGPELKLYQCGLPKEMAVELFKPYLIEKLQKIGEVDKVKNAKKLIEKKQP
EIWSILEEVIKDYPVLLNRAPTLHRLGIQAFMPVLTDNKAIQLHPMVCVPFNADFDGDQM
GVYIPLSIESQIEARVLMLSTRNLLLPANGRLAMAANQDIVLGCYYLTMEETPPPVEIEK
LRHFYGPDEVIAAYEAEEQFCSSKGETVYERNLDLHTWIRLKLESEYIVTTVGRVIFNQI
MPPEVGFQNIVFDKGKLNDLAMLCFDAVGQWRTAQILDQIKELGFHYATRAGVTFSFDDI
VVPKRKDEIIAQADQEVKKITDLHQKGGITENERFGRVVDQWKKTTVRVTDEMMEELSKT
RNGLNSIYMMYKSGARGSKDQIKQLGGMRGLMDKPTKIGSTGGADVIETPIKSNFKEGLT
VLEYFVSTHGARKGLADTALKTADAGYLTRRLVDVAQNAIITIEDCGTTRGVNMTALKEG
NEIVQTLAERIQGRTAVDDIVSPITGRILVSAGEEISNKMARTIQNHGLISVHVRSILTC
EAEKGICAKCYGRNLATQKPATIGDPVGIIAAQSIGEPGTQLTLRTFHIGGAASTATELA
EVVASHDGIVKFDRMNTVINTENQLISVSYLGKILIVDENDENKVLEEFKVEYAATVHVQ
DGQKVAKDTKLLSWDQFNNPLISTAKGVLHYENFIKDITYKEEYNDITMARELTIIESKD
RRKQPQFRIVGEDGTVRLIPLPTGLIVRVEDGSFVHIGDILGQTSRMTIKQRDITGGLPR
VQDLFEARVPKDKAKISDIDGIVTIGGLKKTGRDIFVTPPNGLFAPCDGKVVVLYDEDKN
QYIAVLPDKAVYSENDGKVSIIEENRKKIIQVAKRNQNPVQYPVPKGLQILVKEGESVKK
GTPLCGKLYAVPPEQESIVEIGDNVTMHQPLAGRKYIIPSGKRIIVHQGDYVESGDALSD
GPLDPHDMLVKGVIEAQILILNEIQEIYRKQGVKIDDKHVSVIIRQMFKKVRITDSGSTS
FLQGDIVDKVLVEKENREAIEFGKTPAQFEQLLLGITKTSLLTESWLSAASFQETTKVLT
KAAIEGRVDHLEGLKESIIIGHRIPVGTGTKLYNNMLKKAVNEGKTVAQIIDEFAHRSKE
EESGDYLDF |
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| NT seq |
4530 nt +upstreamnt +downstreamnt
ttgatattgaatttatcaaagaagagaacaagtagaaggagagagaaaatgttaaaagaa
agtaaacacgaaatcaaacctaatgaatatgatgcagtccgcatcaaaattgcctctccc
gaaactatcaggaatgattggtcgcatggagaagttacaaaacccgatacattaaattac
cgcactcttaaacctgaaaaagatggtttattttgtgaaagaattttcggtcctgaaagg
gattatgaatgcgcttgcggaaaatataaaaagaaaagatttcagggaactgtttgtgat
agatgtggagtgcttgtaactacttccagggttcgcagaacgcgtatgggacacatagat
ttggcagttccgattgctcatatctggtttgttaaaagtgccccgagtaaaattggcact
ttacttgatatgacggttaaagacctggaaagagtgctttactacgagtccttcattgta
attgaccccggagatagtccttttgaaaaaatggagcttctggaagttgatgaatattat
gagattaaagataaggtagcggataactttctggctcttatgggaggagaagcaatccgc
gaattgcttaagcgtatcaacctgaaaaatgaagcgcttgacctcagaacccggcttaaa
tttgaagaatcggctttgcgtaaacagaagctaatcaataaattgaaaatagtagatgcc
ttcatcaaaagcggcaatcgtcccgaagatatgattttggaagcattacctgttttacct
ccaactttaagacctttagttcctttggaaggcgggcgttttgccactgcagattttaat
gatttataccgaagagttatcaccagaaacaaccgtctgaaggcattactggaaattcgt
gccccggaagttatccttcgtaatgaaaaaagaatgttgcaggaagcagttgatgccctc
attgataatggtagaaaagctcgtcctgtaagaggaagaggcaataggcccttaaagtca
ttaaccgatcagcttaaaggaaagcagggacgtttccgccaaaaccttttaggtaaacga
gtagattattctggacggagtgtgattacagtgggtcctgaacttaaactttatcaatgc
ggacttcccaaagaaatggctgtggagctttttaagccatatctcattgaaaaactgcag
aaaattggagaagtggataaggttaaaaatgccaagaagcttattgagaaaaagcaacct
gaaatatggtcaattttggaagaagttattaaagattatcctgttttgttgaatagagct
ccaactcttcaccgtttgggaattcaggcatttatgcctgttttaactgataacaaagca
attcagcttcatcctatggtctgtgttccttttaatgccgattttgatggtgaccaaatg
ggtgtttatattcccctgtctatagaatcacaaattgaagcaagagtcctaatgctttct
acccgaaatttattgttgccagcaaatggacgtttggctatggcggctaatcaggatatc
gttttgggctgttattatttaactatggaagaaacaccgccacctgtggaaatagaaaaa
ttgagacatttttacggtcctgatgaagttattgctgcttacgaagcagaagaacaattt
tgcagctccaaaggtgaaacagtttatgaacgcaatttagacctgcatacctggattcgt
ctgaaattggaatccgaatatattgttaccactgtaggaagggttattttcaaccagata
atgcctccggaagtcggctttcaaaacatcgtatttgacaaggggaaattgaatgatttg
gctatgctttgttttgatgcagtaggacaatggagaacagctcaaattctggaccagatt
aaagaattgggatttcattatgccactcgtgcaggcgttactttcagctttgatgatatt
gtagttcctaaacggaaagatgaaattattgcccaagctgatcaggaagtaaaaaaaata
accgatcttcaccagaaaggcggaattacggaaaatgaacgcttcggacgagttgtggac
caatggaagaaaacaactgttcgcgttaccgacgaaatgatggaagagctttctaaaacc
agaaatggcttaaattctatttatatgatgtataaatcaggtgcccgcggcagcaaagac
cagattaaacaattgggtggaatgcgcggtttaatggataagccaactaaaataggttca
acaggtggagcagatgttattgaaaccccaattaaaagtaattttaaggaaggacttact
gttcttgaatattttgtttccactcacggagctcgtaaaggattagctgatacagcactt
aaaacagcggatgcaggatatcttacacgccgtttggttgatgtggcacaaaatgctatt
atcacaattgaggattgcggaaccacaaggggtgtgaatatgacagcccttaaagaagga
aatgaaattgtgcaaaccctggcagaacgcattcagggaagaacagcagttgatgatatc
gtaagtcctatcacaggcagaatattagtttccgcaggtgaagaaatcagtaacaaaatg
gcaagaactattcaaaatcacggtttgatttctgtccatgtgcgcagcattcttacctgt
gaagcagaaaaaggaatttgtgccaaatgttacggtcgcaatcttgctactcagaaacct
gctactattggtgatcctgttggaattattgcagctcaaagtattggtgaaccgggaaca
caattaacgcttagaactttccatattggaggcgctgcttctacagctaccgaactggca
gaagttgttgcttcgcatgatggaattgtaaaatttgaccgcatgaataccgttatcaat
acggaaaatcagcttatttccgtgagttatttgggtaaaatcttaattgtggatgaaaat
gatgagaataaggttttggaagagtttaaagtagaatacgcagctaccgttcatgttcag
gatggtcaaaaggtggctaaagatacaaaacttctttcctgggatcagttcaataatcct
cttatctcaacagccaaaggtgttttgcattatgagaatttcatcaaagatataacctat
aaagaagaatataacgatattactatggctcgcgagcttaccatcattgaatccaaagac
cggagaaaacaacctcaattcagaattgtaggtgaagacggaacagtgcgtttaatacct
ctgccaacgggacttattgtccgcgtggaagatggcagctttgtccatattggtgatatt
ttaggtcagacatcacgaatgacaattaaacaacgcgatattacaggtggtttgcctcgt
gtgcaagacctttttgaagcaagagttcccaaagataaagccaaaatttccgatattgac
ggaattgttactatcggtggtttaaagaaaaccggaagagatatttttgttacaccacct
aatggacttttcgcaccttgtgatggaaaggtcgtagtcctttatgatgaagataaaaat
caatatattgccgtccttcccgacaaagccgtttatagtgaaaacgatggcaaggtaagt
attattgaagaaaaccggaagaagattattcaggttgctaaacgcaatcaaaacccggtt
caatatcctgtccctaagggcttgcaaattctggttaaagagggagaatcagttaaaaaa
ggaactcctctttgcggcaaactttacgccgttcccccagagcaggaaagtattgtggaa
ataggtgataatgttactatgcatcaacctcttgcaggcagaaagtatataattccttcc
ggaaagcggattatcgttcatcagggtgactatgtggaaagtggggatgcactatctgac
ggtcctcttgacccacatgatatgttagtgaaaggggttattgaagctcaaatcctgatt
ttaaacgaaattcaggaaatttaccgcaagcagggtgtgaaaattgacgataaacatgtg
agcgttattattcgccaaatgtttaaaaaggttagaattacagatagcggcagcaccagt
ttcctgcagggtgatattgttgataaggttctggtggaaaaagaaaaccgcgaagcaatt
gaatttggcaaaacacctgcccagtttgaacaattgcttttaggaattaccaaaacatct
ctgttaaccgagagctggctttctgcagcttccttccaggaaaccacaaaagtgcttacc
aaggcagctattgagggcagggttgatcatcttgagggcttgaaagaaagcattattatc
ggtcacagaatacctgtcggaacaggaaccaaactctataacaatatgcttaaaaaggca
gttaacgaaggtaaaactgttgctcagattattgacgagtttgcacatcgttcaaaagaa
gaagaaagcggggactaccttgatttctaa |
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