Candidatus Cloacimonas acidaminovorans: CLOAM1473
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Entry
CLOAM1473 CDS
T04769
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
caci
Candidatus Cloacimonas acidaminovorans
Pathway
caci03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
caci00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CLOAM1473 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
caci03019
]
CLOAM1473 (pnp)
03016 Transfer RNA biogenesis [BR:
caci03016
]
CLOAM1473 (pnp)
Enzymes [BR:
caci01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CLOAM1473 (pnp)
Messenger RNA biogenesis [BR:
caci03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CLOAM1473 (pnp)
Transfer RNA biogenesis [BR:
caci03016
]
Prokaryotic type
tRNA degradation factors
CLOAM1473 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH-I_KHDC4-BBP
KH_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
CAO81324
UniProt:
B0VFI6
LinkDB
All DBs
Position
complement(1704349..1706580)
Genome browser
AA seq
743 aa
AA seq
DB search
MHNFNITRRETDFCGRKLIVETGKMAKQANGSVFIQYGETAVLVTATMSKEPAEDQDFFP
LTVDYIEKMYAAGKIPGGFFKRESKPSTDATLMARVIDRSIRPLFPEGFRNQVHIVVTVL
SFDGVTDPSTMGVFGASLALSISDIPFNGPIASVTVGYIDNQFVVNPHFNEIETQSKLNL
TVAGSESSIVMIESAASELSEEMMLDAVFTGHKEIQKLCALQQDFISACGKEKVEVVLDS
IPEEIMNKVENAFGAKIAEATVIFGKQERQDAFDAAEAEMVEMFSQQEDTDLSPWEETER
YYKMAFDELIRRYVRDSILRKQHRVDGRGTDDIREITCEIDVLPRVHGSALFTRGETQSL
GTLTLGGGTDEQVIDGLETEYKKSFYLHYNFPPYSVGEVGRIGPTGRRELGHGNLAERAL
KAVLPDKDSFPYTIRIVADTLESNGSSSMASICSGCLALMAGGVPIKAPVAGIAMGLIME
GEDYVVLTDIMGLEDHLGDMDFKCAGTREGITAMQMDIKISGITREIMQIALNKAKSARF
KILDIMAECIAEPRSELAPWAPRIESFKVPIDKIGEIIGPGGKMIKSIIEECQVQIDIQD
DGTVRILSPDKESINKAKSIIKGIAVDPVAGDMFEGQVTRIEPYGIFVKILGGTKEGMVH
ISEMYTGRINHPLDMVKLGDKVQVRTLGMDKGKLSLSMKGVAGNPEPHPDAHREEQQNYH
QQNRDDRNRGRNSGRNDYHRHHR
NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcataacttcaatattactcgtcgtgaaaccgatttttgcggacgcaaattgattgta
gaaacaggcaaaatggcaaagcaagccaatggcagtgttttcattcaatatggagaaaca
gctgttttggttacagccacgatgtctaaagagcccgcggaagatcaggatttctttccc
ttaaccgttgattacattgaaaagatgtatgcagccggcaaaatacccggcggttttttt
aaacgagagtccaaaccctcaactgatgccactttgatggcaagggttattgaccgttcc
attcgtcctttgtttccggaaggttttcggaatcaggttcatattgtagtaaccgtgctt
tcttttgatggagtaaccgatccttctacaatgggtgtttttggagcttctttggctctt
tccatttccgatatacctttcaacggacctattgccagtgtgacggttggctacattgat
aaccaatttgtagtaaatccccattttaatgaaattgaaacccaatccaagctcaattta
accgttgccggaagtgagagttcaattgtgatgattgaatcggcagcttcggaactgagc
gaagaaatgatgctggatgctgtttttactggccataaggaaattcaaaaactctgcgct
ttgcaacaggattttatttctgcctgcggaaaagaaaaggtagaagtagttctggacagc
attccggaagaaataatgaacaaggtagaaaatgctttcggtgcaaaaatagctgaagca
accgttatttttggcaaacaggaaagacaggatgcctttgacgcagctgaagcagaaatg
gtagaaatgttttcccagcaagaagatacggatttaagcccttgggaagaaacggagaga
tactataaaatggcttttgatgagcttatccgtcgctatgtgcgtgattccattttaaga
aaacagcatcgtgtagatggtcgaggaacagatgacattcgggaaattacttgtgaaatt
gatgttttaccccgagtgcatggatcagcactttttaccagaggtgaaacacaatccctg
gggactttaactttaggcggaggaactgatgaacaggtgatagacggcttggaaacagaa
tataagaagagcttttatctgcattacaattttcctccttatagcgttggcgaagttgga
agaataggacctacgggtcgtcgtgaactgggacatggaaatttagcggaaagggcttta
aaagctgtattgcccgataaagattcctttccttacactattcgcatagtggcagatacg
ctggaatctaacggttcttcatctatggcatctatttgtagcggatgtttagctttgatg
gcaggtggagttcctataaaagctcctgttgccggaatcgctatgggtttaataatggaa
ggtgaggactatgttgttttaaccgatattatgggtttggaagatcacttgggagatatg
gatttcaagtgtgccggaacgcgggaaggcataacagcaatgcaaatggatattaagatt
tcgggaattaccagagaaattatgcaaattgctttaaataaggcaaaatcagctcgcttt
aagattttggatattatggctgaatgcattgccgaacccagaagtgaacttgctccttgg
gctccccgaattgaatcattcaaagtgcctatagataagattggagagattataggacct
ggcggaaagatgataaaatcaattattgaagaatgtcaggtacagattgatattcaggat
gacggaacggtaagaatactttctcccgataaggaatccattaataaagccaaaagtata
attaaaggaattgctgttgatcccgttgccggtgatatgtttgaaggtcaggtaacccgc
attgaaccctacggaatttttgtaaaaattttagggggaacgaaagaaggaatggtgcat
atttcggaaatgtataccggacgcataaatcatcccctggatatggttaaattaggagat
aaagtgcaagtaagaaccctgggaatggataaaggcaaactttctttatctatgaaagga
gttgccggaaatcctgaaccacatcctgatgcccatagagaagaacagcaaaattatcat
cagcaaaatcgtgatgataggaatagaggtagaaatagcggcaggaatgactatcatcgt
catcatcgttaa
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