Cognatishimia activa: HZ995_08070
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Entry
HZ995_08070 CDS
T07138
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cact
Cognatishimia activa
Pathway
cact03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cact00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZ995_08070 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cact03019
]
HZ995_08070 (rnr)
03016 Transfer RNA biogenesis [BR:
cact03016
]
HZ995_08070 (rnr)
Enzymes [BR:
cact01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
HZ995_08070 (rnr)
Messenger RNA biogenesis [BR:
cact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HZ995_08070 (rnr)
Transfer RNA biogenesis [BR:
cact03016
]
Prokaryotic type
tRNA degradation factors
HZ995_08070 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
QTN34475
UniProt:
A0A975ELZ3
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Position
1663205..1665460
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AA seq
751 aa
AA seq
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MQMPTKEEVLEWISDNPTLTSKRDIAKAFGIKGAARIDLKRLLRELEAEGHLQKRNKTYR
DPDKLPPVSVLQVSEVDSDGDLFARPMEWQGEGAEPRILMMLKPSDPALGPGDRLLARLT
EVSGEDHAYEGRLIRRIGTNPRRVLGVFRKTSEGGRILPIDKGDDKQWQVPEGAVNGAKD
GELVEAEQAGPKSRMGLPRARIVNRLGDPTAPKAVSLIAIHQHGIPDDFPDEVIAEADAA
KPAGLGDRTDLREMPLVTIDPADARDHDDACWAEADDDPKNPGGHIVWVAIADVAHYVTP
GSALDREAKKRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACMAVRMKLDAKGHKISH
RFMRAMMKSVASLNYEEVQAAQEGNPNERCAALMGDVITPLYAAYEATKIARAERQPLEL
DLPERKVVLTDDGEVASINFRDRLDAHRLIEEFMILANVAAAETLIAKGAPQLFRVHEEP
APEKLDSLREVARASGFNLAKGQVLKTAHLNRLLNEAAGSDEAELINMSTLRSMTQAYYS
PQNFGHFGLSLQSYAHFTSPIRRYADLIVHRALVGSHGWGEDGLSPQDIENLEKTASHIS
ETERRSMLAERDTTDRYLAAYLSERLGNEFTGKIAGIAKFGVFVRLDETGADGLVPMREL
GREYFNFDKGSNTLVGSDTGQVIHLGQRVVVRLAEAAPVTGGVVLDLLEIDGKKPSQGSK
RGRGRPVKRKASSHKKRAAKTARKVSRKRRS
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgcagatgccgacaaaagaagaggtccttgagtggatctctgacaatccgaccctcacc
agcaaacgtgacatcgccaaagcctttggcatcaaaggcgctgcgcggatcgacctgaaa
cgtctgttgcgagagcttgaggccgagggccatctgcaaaagcgcaataaaacctatcgc
gatcccgacaaactgccgcctgtgagcgtgctgcaggtttccgaagtcgacagcgacggt
gatctctttgcccgcccgatggaatggcagggcgagggggcagagccgcgcattctgatg
atgctgaaacccagcgatccagcgttggggccgggggatcgcctgctggcgcggctaact
gaggtttcgggcgaagatcacgcctatgaaggccgcctcattcggcgcatcggtacgaac
ccgaggcgggttttgggcgtcttccgcaaaacgtcagaaggcggacggatcctgcctatc
gacaagggcgacgacaaacagtggcaagtgcccgagggcgctgtgaatggcgccaaagat
ggtgaattggttgaggccgaacaagccggacccaaatcccgtatgggcttgccccgcgcg
cggatcgtgaaccggctcggagatcccactgcacccaaagcggtgtcgctgattgcgatc
catcaacatggcattcccgatgacttcccggatgaggtcattgccgaggcggatgcggct
aagcccgcaggcctcggagatcgcacggacttgcgcgagatgcctctggtcaccatcgac
cccgcagatgcgcgcgatcacgacgatgcctgctgggctgaagccgatgatgatcccaaa
aacccgggcggtcacatcgtctgggtcgcgattgccgatgtggcgcattatgtgacgccc
ggatcagcactggaccgagaggccaagaagcgcggcaactccagctattttccggatcgc
gttgtgcccatgttgccggatcgtctgtcgggggatctctgctcgctgcacgaaggcgtg
ccacgtgcctgtatggcggtgcggatgaaactcgacgccaagggccacaagatctcgcat
cggttcatgcgagccatgatgaaatccgtggcctcgctgaattacgaagaggtgcaggcc
gcgcaagagggcaatccgaacgaacgctgtgccgccttgatgggtgacgtgattacgccg
ctctatgcggcctatgaagcgaccaaaatcgcgcgtgctgaacgtcaacctctcgagttg
gatctgccggagcgcaaggtcgtactaacggacgacggcgaggtcgcgtcgatcaatttc
cgagatcgactagatgcccaccgcctgatcgaggaattcatgatcctcgccaatgttgcg
gccgccgagaccctgatcgcgaaaggcgcaccgcagctgttccgtgttcacgaagagcct
gcgcctgagaaactcgacagtctgcgcgaggtggcgcgggcctctgggttcaacttggcc
aaaggacaggtgctgaagacggcgcaccttaatcggctattgaacgaggctgctggctct
gatgaggccgaactcatcaatatgtcgacgctgcgctccatgacgcaggcttattattcg
ccacagaacttcgggcattttggcctgtcgctgcagtcctatgcacatttcacttcgccc
attcgccgctatgccgacctgattgtgcaccgtgctctggttgggtcgcatggatggggc
gaggatggtttgtcgccacaagacattgaaaatctggaaaagaccgcgagtcatatttct
gagaccgaacgccgctcgatgctggcggagcgcgatacgacggatcgttacctcgcagcc
tatctgagcgagcggttgggcaatgaattcaccggcaagattgcgggtattgccaagttt
ggggtctttgttcggctggatgaaactggcgctgatggccttgtcccgatgcgagaactt
ggccgcgaatatttcaatttcgacaaaggcagcaatacgctggtgggctcggacactggg
caggtcattcaccttggccagcgagtcgtggtgcgactggcggaggctgcccctgtgacc
ggtggtgtggtgctcgacttgttggaaatcgacggcaagaaaccaagccaaggttccaag
cgcgggcgagggcgacctgtgaagcgcaaagcctcgtctcacaagaaacgagccgccaag
acagcacgtaaggtgtctcggaagcgccgcagctag
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