Clostridium acetobutylicum DSM 1731: SMB_G0617
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Entry
SMB_G0617 CDS
T01548
Symbol
helD
Name
(GenBank) superfamily I DNA/RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cae
Clostridium acetobutylicum DSM 1731
Pathway
cae03420
Nucleotide excision repair
cae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SMB_G0617 (helD)
03430 Mismatch repair
SMB_G0617 (helD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cae03400
]
SMB_G0617 (helD)
Enzymes [BR:
cae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SMB_G0617 (helD)
DNA repair and recombination proteins [BR:
cae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SMB_G0617 (helD)
MMR (mismatch excision repair)
Other MMR factors
SMB_G0617 (helD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Viral_helicase1
SLFN-g3_helicase
PhoH
AAA_30
FeoB_Cyto
CbiA
Motif
Other DBs
NCBI-ProteinID:
AEI34340
LinkDB
All DBs
Position
697529..699694
Genome browser
AA seq
721 aa
AA seq
DB search
MERDERNTDGEVNRLIEEKNKAEELESEALKLKGVIEIINREIIQYINKKKEISQYIIEE
REKTLEDYADDEDKIIEYFDHERYVKEETFSIIYKRLKELNILLSSPYFGKIDFEEEGLG
EEKIYIGRFGVTPSGGYEPLVVDWRAPIASLFYTPELGQTRYKAPAGDVTVNVKGKRQYI
IKKGKLEGFFDSEVDVKDEILQMVLSKNTGDKLRDIVMTIQSEQDNIIRQERNKISVVNG
VAGSGKTTIALHRVAFLLYNYRTILQDKILILGPNPVFMEYIKNVLPSLGEENVRQETFV
DFALDILPLDTYDIMSTRDYMEKILMEDEEFIQDVKRKTSDNYITALDNLVSEIERQYKD
NMQDVFYGDIRAVSRGEIVELFTEYYEYMPLFRRNKKIRRIIFSKLKDIRDEKIRQIQKE
YEEAVKNSTSEELNLQGNKLMFQRKLKIRETLRRLMEAKRSLTWLDNIDVLEIYKRLNGD
KIYTIDDVAPLMYIKIRLDGVKLEREVKHVVIDEAQDYSKLQFIVIKKLTNCLGMTIVGD
SNQRLIPKFDEKIAMERMDTIFEDMDFEMFKLDKSYRSTKEIMEYANRFLNDTSIIPMVR
SGEKVQSLSISSEDEFVDRVTYAIDDMKKEGIETIGVICENMHDTKYFGELLKSKKYINI
IEKENQIYTGGETVMPSYFAKGLEFDGVILVSRENKENKDRVLYVMATRALHKLYDFHIE
F
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagatgaacgaaatacagatggagaagttaacagattaattgaggaaaaaaat
aaggccgaggaacttgaaagtgaagctttaaaattaaaaggcgttattgagattataaat
agggaaataattcagtatataaataagaaaaaagaaatctcacagtatataattgaagaa
agagaaaagactcttgaagattacgcagatgatgaagataagataatagaatattttgat
catgaaagatatgttaaggaagaaacctttagtatcatatataaaagacttaaagaatta
aatatcttattatcctcaccttactttggaaagattgactttgaagaggagggtttagga
gaagaaaaaatatatataggtagatttggagttacaccaagcggagggtatgaaccttta
gtagttgactggagagcacctatagcttctctcttttatactcctgaattagggcaaact
agatataaagctccagctggagacgtaactgtaaatgtaaaaggtaagaggcaatatata
ataaaaaaaggtaaacttgaaggattttttgattcggaagttgatgtaaaagatgaaata
cttcaaatggttttaagtaaaaatacaggagataaactccgcgatattgtaatgacaata
caatctgagcaggacaatattataaggcaggaaagaaataaaatatcagtagtaaatgga
gttgctggaagtggtaagacaactatagcacttcatagagttgcgttccttttgtataat
tacagaaccatacttcaagataaaattttaattttaggacctaatccagtttttatggaa
tacataaaaaatgtactcccaagtcttggagaagaaaatgtaagacaggagacttttgtt
gattttgcacttgatatacttccacttgatacttacgatattatgagtactagagattat
atggaaaaaattcttatggaagatgaagaatttatacaggatgttaagcgtaaaacttct
gataactatataactgcacttgataatcttgtttctgagatagaaagacaatataaggat
aatatgcaggatgtgttttatggagatataagagcagttagcagaggagaaatagtagag
ctttttactgaatactatgaatatatgcctctttttagaagaaataaaaaaataagaaga
ataatttttagtaagcttaaagacataagagatgagaagattaggcaaatacaaaaggaa
tatgaagaggcagttaagaacagtacttctgaagaactaaatttgcagggaaataagctt
atgtttcagagaaagcttaaaatacgtgaaactctaaggcgacttatggaggctaagaga
tctcttacatggcttgataacattgatgtacttgaaatttataaaaggcttaacggtgac
aaaatatatactatagatgacgtagcaccgcttatgtatattaaaataaggttagatgga
gtaaaacttgaacgtgaggtaaagcatgtagttatagatgaggcacaggattatagtaaa
ctgcagtttattgtgataaagaaacttacaaattgtcttggcatgactattgttggagat
tcaaatcaaagattgattccaaaatttgatgaaaaaattgctatggaaagaatggatact
atctttgaagatatggattttgaaatgtttaagcttgacaaaagctatagatcaactaag
gaaataatggaatacgccaatagatttttaaatgacacgagtataattccaatggttaga
agtggtgagaaggttcaaagtttatccattagcagtgaagatgaatttgtagatagggtt
acttatgccattgacgatatgaaaaaagaaggaattgaaacaataggtgtaatatgtgaa
aatatgcatgacactaaatatttcggtgaactactaaaaagcaaaaagtatataaatata
atagaaaaagaaaatcaaatttatacaggtggagagacagttatgccttcttattttgct
aaaggattagagttcgatggtgtaattcttgtaagtagagaaaataaagagaataaagat
agggttttatatgttatggctactagagctcttcataaattgtatgattttcatatagag
ttttaa
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